Childhood Cancer Data Lab
@cancerdatalab.bsky.social
Established by Alex’s Lemonade Stand Foundation (ALSF) to empower pediatric cancer experts poised for the next big discovery with the knowledge, data, and tools to reach it.
📊 Access rich datasets that include data, metadata, and expertly curated cell type annotations…for free!
September 30, 2025 at 2:00 PM
📊 Access rich datasets that include data, metadata, and expertly curated cell type annotations…for free!
🔍 User-friendly search and filter tools allow you to quickly find the projects you’re interested in.
September 30, 2025 at 2:00 PM
🔍 User-friendly search and filter tools allow you to quickly find the projects you’re interested in.
🔬Explore over 700 samples from 55 pediatric cancer types, all in one place.
September 30, 2025 at 2:00 PM
🔬Explore over 700 samples from 55 pediatric cancer types, all in one place.
Connect with our team at the #AACR Special Conference: Discovery and Innovation in #PediatricCancer! Dr. Ally Hawkins will be presenting our work on a collaboration aimed at uncovering therapeutic vulnerabilities in #EwingSarcoma.
🗓️ Tonight (9/25) | 7-9:30PM
📍 Poster Session A
🗓️ Tonight (9/25) | 7-9:30PM
📍 Poster Session A
September 25, 2025 at 4:41 PM
Connect with our team at the #AACR Special Conference: Discovery and Innovation in #PediatricCancer! Dr. Ally Hawkins will be presenting our work on a collaboration aimed at uncovering therapeutic vulnerabilities in #EwingSarcoma.
🗓️ Tonight (9/25) | 7-9:30PM
📍 Poster Session A
🗓️ Tonight (9/25) | 7-9:30PM
📍 Poster Session A
Several projects on the Portal contain bulk RNA-seq data in addition to single-cell/nuclei RNA-seq data. We compared modalities across five solid tumor projects to explore potential biological differences.
July 1, 2025 at 5:06 PM
Several projects on the Portal contain bulk RNA-seq data in addition to single-cell/nuclei RNA-seq data. We compared modalities across five solid tumor projects to explore potential biological differences.
Using an ontology-based approach, we have assigned consensus cell types to all samples on the ScPCA Portal. They are now included in all processed and merged datasets from the Portal!
July 1, 2025 at 5:06 PM
Using an ontology-based approach, we have assigned consensus cell types to all samples on the ScPCA Portal. They are now included in all processed and merged datasets from the Portal!
Thank you to everyone who joined us to learn advanced topics in #SingleCell #RNAseq analysis this week. We look forward to hosting more researchers at our workshops this year.
June 12, 2025 at 2:30 PM
Thank you to everyone who joined us to learn advanced topics in #SingleCell #RNAseq analysis this week. We look forward to hosting more researchers at our workshops this year.
The ALSF Data Lab and Grants teams are at #AACR25! Interested in learning how we can support your #PediatricCancer research? Connect with us at booth 3706.
April 28, 2025 at 5:59 PM
The ALSF Data Lab and Grants teams are at #AACR25! Interested in learning how we can support your #PediatricCancer research? Connect with us at booth 3706.
This week, we brought our training program to the Treehouse #ChildhoodCancer Initiative at @ucscgenomics.bsky.social! We designed a workshop just for their team, covering #ReproducibleResearch practices, collaborative project management with Git/GitHub, analytical code review and more!
April 11, 2025 at 3:42 PM
This week, we brought our training program to the Treehouse #ChildhoodCancer Initiative at @ucscgenomics.bsky.social! We designed a workshop just for their team, covering #ReproducibleResearch practices, collaborative project management with Git/GitHub, analytical code review and more!
The complete module is available for anyone to explore here! github.com/AlexsLemonade/OpenScPCA-analysis/tree/main/analyses/cell-type-ewings
March 6, 2025 at 4:14 PM
The complete module is available for anyone to explore here! github.com/AlexsLemonade/OpenScPCA-analysis/tree/main/analyses/cell-type-ewings
Do you have experience analyzing single-cell RNA-Seq data and annotating cell types? We've just launched new grant opportunities that offer unique ways to get involved with OpenScPCA!
Explore the full grants table and get started here: github.com/AlexsLemonade/OpenScPCA-analysis/discussions/1062
Explore the full grants table and get started here: github.com/AlexsLemonade/OpenScPCA-analysis/discussions/1062
February 26, 2025 at 4:20 PM
Do you have experience analyzing single-cell RNA-Seq data and annotating cell types? We've just launched new grant opportunities that offer unique ways to get involved with OpenScPCA!
Explore the full grants table and get started here: github.com/AlexsLemonade/OpenScPCA-analysis/discussions/1062
Explore the full grants table and get started here: github.com/AlexsLemonade/OpenScPCA-analysis/discussions/1062
Our upcoming workshop is now full, but new opportunities will be announced soon! We're hosting more workshops for #PediatricCancer researchers on:
- #SingleCell RNA-Seq
- Advanced Single-cell #RNASeq
- Reproducible Research Practices
✉️ Sign up to be notified when applications open! bit.ly/3eQZXGQ
- #SingleCell RNA-Seq
- Advanced Single-cell #RNASeq
- Reproducible Research Practices
✉️ Sign up to be notified when applications open! bit.ly/3eQZXGQ
February 17, 2025 at 4:36 PM
Our upcoming workshop is now full, but new opportunities will be announced soon! We're hosting more workshops for #PediatricCancer researchers on:
- #SingleCell RNA-Seq
- Advanced Single-cell #RNASeq
- Reproducible Research Practices
✉️ Sign up to be notified when applications open! bit.ly/3eQZXGQ
- #SingleCell RNA-Seq
- Advanced Single-cell #RNASeq
- Reproducible Research Practices
✉️ Sign up to be notified when applications open! bit.ly/3eQZXGQ