Broncio Aguilar-Sanjuan
@broncio.bsky.social
Bioinformatics Scientist and Engineer working at the Ineos Oxford Institute
Reposted by Broncio Aguilar-Sanjuan
Upcoming community sessions this week
carpentries.org/community/ev...
Events are in UTC Time :
Having Difficult Conversations
19 Nov 14:00
Ten Years of Library Carpentry
19 Nov 16:00
HPC Carpentry Community Call
20 Nov 12:00 & 22:00
carpentries.org/community/ev...
Events are in UTC Time :
Having Difficult Conversations
19 Nov 14:00
Ten Years of Library Carpentry
19 Nov 16:00
HPC Carpentry Community Call
20 Nov 12:00 & 22:00
Community Events
There are many opportunities to join community meetings, subcommittees and debriefing sessions. Find links to them on this Etherpad, and subscribe to the Google calendar below or use this ics feed to…
carpentries.org
November 17, 2025 at 6:00 AM
Upcoming community sessions this week
carpentries.org/community/ev...
Events are in UTC Time :
Having Difficult Conversations
19 Nov 14:00
Ten Years of Library Carpentry
19 Nov 16:00
HPC Carpentry Community Call
20 Nov 12:00 & 22:00
carpentries.org/community/ev...
Events are in UTC Time :
Having Difficult Conversations
19 Nov 14:00
Ten Years of Library Carpentry
19 Nov 16:00
HPC Carpentry Community Call
20 Nov 12:00 & 22:00
Reposted by Broncio Aguilar-Sanjuan
Check out our new paper in Nature Machine Intelligence on predicting the structural flexibility of antibody and TCR CDR loops. Although methods like AlphaFold have transformed static structure prediction, capturing conformational dynamics remains a challenge.
October 16, 2025 at 3:45 PM
Check out our new paper in Nature Machine Intelligence on predicting the structural flexibility of antibody and TCR CDR loops. Although methods like AlphaFold have transformed static structure prediction, capturing conformational dynamics remains a challenge.
Reposted by Broncio Aguilar-Sanjuan
🤔 Do you want to learn data analysis & computational skills but not sure where to start?
💡 Why don't you try one of our Carpentries workshops?
📝 Read our blogpost with highlights from our latest workshop on Python and Git and find out more.
rr.ox.ac.uk/article/soft...
#Carpentries #Oxford #Python
💡 Why don't you try one of our Carpentries workshops?
📝 Read our blogpost with highlights from our latest workshop on Python and Git and find out more.
rr.ox.ac.uk/article/soft...
#Carpentries #Oxford #Python
Software Carpentries - workshops and tutor training
rr.ox.ac.uk
October 16, 2025 at 6:37 AM
🤔 Do you want to learn data analysis & computational skills but not sure where to start?
💡 Why don't you try one of our Carpentries workshops?
📝 Read our blogpost with highlights from our latest workshop on Python and Git and find out more.
rr.ox.ac.uk/article/soft...
#Carpentries #Oxford #Python
💡 Why don't you try one of our Carpentries workshops?
📝 Read our blogpost with highlights from our latest workshop on Python and Git and find out more.
rr.ox.ac.uk/article/soft...
#Carpentries #Oxford #Python
Just for fun. I just published a blogpost on how to resize and crop multiple images programmatically medium.com/@ba13026/res...
#imageediting #photography #WebDevelopment
#imageediting #photography #WebDevelopment
Resize and crop multiple images programmatically
Quick preamble (skip if you want)
medium.com
October 9, 2025 at 4:59 PM
Just for fun. I just published a blogpost on how to resize and crop multiple images programmatically medium.com/@ba13026/res...
#imageediting #photography #WebDevelopment
#imageediting #photography #WebDevelopment
Reposted by Broncio Aguilar-Sanjuan
Upcoming community sessions next week
carpentries.org/community/ev...
Events are in UTC Time :
📣 Workbench Transition Coworking
29 Sep 08:00 & 18:00
📣 US Midwest Community Call
1 Oct 17:00
📣 HPC Carpentry Community Call
2 Oct 11:00 & 21:00
📣 CarpentriesOffline Community Call
3 Oct 13:00
carpentries.org/community/ev...
Events are in UTC Time :
📣 Workbench Transition Coworking
29 Sep 08:00 & 18:00
📣 US Midwest Community Call
1 Oct 17:00
📣 HPC Carpentry Community Call
2 Oct 11:00 & 21:00
📣 CarpentriesOffline Community Call
3 Oct 13:00
Community Events
There are many opportunities to join community meetings, subcommittees and debriefing sessions. Find links to them on this Etherpad, and subscribe to the Google calendar below or use this ics feed to…
carpentries.org
September 29, 2025 at 5:45 AM
Upcoming community sessions next week
carpentries.org/community/ev...
Events are in UTC Time :
📣 Workbench Transition Coworking
29 Sep 08:00 & 18:00
📣 US Midwest Community Call
1 Oct 17:00
📣 HPC Carpentry Community Call
2 Oct 11:00 & 21:00
📣 CarpentriesOffline Community Call
3 Oct 13:00
carpentries.org/community/ev...
Events are in UTC Time :
📣 Workbench Transition Coworking
29 Sep 08:00 & 18:00
📣 US Midwest Community Call
1 Oct 17:00
📣 HPC Carpentry Community Call
2 Oct 11:00 & 21:00
📣 CarpentriesOffline Community Call
3 Oct 13:00
Good follow-up talk after attending #CampyUK for the last two days 🦠🦜
Join Dr Bruno Silvester Lopes' Seminar this Friday on ‘Bad Bugs Fight Drugs: The Fall and Rise of Antimicrobial-Resistant Campylobacter.' Register here: microb.io/3JBkwGS #JMM
September 26, 2025 at 7:10 AM
Good follow-up talk after attending #CampyUK for the last two days 🦠🦜
Very pleased to have become a certified #Carpentries instructor. Thank you very much to @rr-ox.bsky.social and @sheppardlab.bsky.social for their support.
I will be able to assist The Carpentries' mission to build global capacity in data and computational skills for open and reproducible research.
I will be able to assist The Carpentries' mission to build global capacity in data and computational skills for open and reproducible research.
September 25, 2025 at 4:56 PM
Very pleased to have become a certified #Carpentries instructor. Thank you very much to @rr-ox.bsky.social and @sheppardlab.bsky.social for their support.
I will be able to assist The Carpentries' mission to build global capacity in data and computational skills for open and reproducible research.
I will be able to assist The Carpentries' mission to build global capacity in data and computational skills for open and reproducible research.
Reposted by Broncio Aguilar-Sanjuan
Carrying on the Peru studies, Kerry Cooper details the introgression of RE-cmeB gene from C. jejuni into C. coli. This gene is involved in multi-drug resistance and found more commonly in commercial chickens 🐓🇵🇪 #CampyUK2025 @microbiologysociety.org @ineosoxford.bsky.social @biology.ox.ac.uk
September 25, 2025 at 11:35 AM
Carrying on the Peru studies, Kerry Cooper details the introgression of RE-cmeB gene from C. jejuni into C. coli. This gene is involved in multi-drug resistance and found more commonly in commercial chickens 🐓🇵🇪 #CampyUK2025 @microbiologysociety.org @ineosoxford.bsky.social @biology.ox.ac.uk
Reposted by Broncio Aguilar-Sanjuan
Ben Pascoe @benizao.bsky.social @sheppardlab.bsky.social shining a light on C. coli - although less common than C. jejuni, it has higher levels of AMR. His work in Peru highlights the importance of this pathogen in LMICs due constant exposure with backyard livestock and antibiotic use 🇵🇪 #CampyUK2025
September 25, 2025 at 11:22 AM
Ben Pascoe @benizao.bsky.social @sheppardlab.bsky.social shining a light on C. coli - although less common than C. jejuni, it has higher levels of AMR. His work in Peru highlights the importance of this pathogen in LMICs due constant exposure with backyard livestock and antibiotic use 🇵🇪 #CampyUK2025
Reposted by Broncio Aguilar-Sanjuan
Our fantastic @sheppardlab.bsky.social DPhil student Madison Goforth gives us a global overview of Campylobacter source attribution and the spread of AMR 🌎💊🌎 #CampyUK2025 @microbiologysociety.org @ineosoxford.bsky.social @biology.ox.ac.uk
September 25, 2025 at 10:11 AM
Our fantastic @sheppardlab.bsky.social DPhil student Madison Goforth gives us a global overview of Campylobacter source attribution and the spread of AMR 🌎💊🌎 #CampyUK2025 @microbiologysociety.org @ineosoxford.bsky.social @biology.ox.ac.uk
Reposted by Broncio Aguilar-Sanjuan
#CampyUK2025 organiser Dr Fran Colles @fran-co001.bsky.social outlines findings from the soon to be published PATH-SAFE report - Campylobacter cases and fluoroquinolone resistance are on the rise, with most of these infections coming from chickens 🐓💊 @sheppardlab.bsky.social
September 25, 2025 at 9:43 AM
#CampyUK2025 organiser Dr Fran Colles @fran-co001.bsky.social outlines findings from the soon to be published PATH-SAFE report - Campylobacter cases and fluoroquinolone resistance are on the rise, with most of these infections coming from chickens 🐓💊 @sheppardlab.bsky.social
Reposted by Broncio Aguilar-Sanjuan
Keynote speaker Prof Dave Kelly is providing us with some Campylobacter biochemistry for the first talk for day 2 of #CampyUK2025 ⚛️🧪 @microbiologysociety.org @ineosoxford.bsky.social @biology.ox.ac.uk
September 25, 2025 at 8:44 AM
Keynote speaker Prof Dave Kelly is providing us with some Campylobacter biochemistry for the first talk for day 2 of #CampyUK2025 ⚛️🧪 @microbiologysociety.org @ineosoxford.bsky.social @biology.ox.ac.uk
Reposted by Broncio Aguilar-Sanjuan
Genomic epidemiology of Campylobacter in England and emergence of invasive Campylobacter ureolyticus in England
@ukhsa.bsky.social
@campyuk2025.bsky.social
@amydouglas.bsky.social
@ukhsa.bsky.social
@campyuk2025.bsky.social
@amydouglas.bsky.social
September 24, 2025 at 5:53 PM
Genomic epidemiology of Campylobacter in England and emergence of invasive Campylobacter ureolyticus in England
@ukhsa.bsky.social
@campyuk2025.bsky.social
@amydouglas.bsky.social
@ukhsa.bsky.social
@campyuk2025.bsky.social
@amydouglas.bsky.social
Reposted by Broncio Aguilar-Sanjuan
Panel discussion time - what are the current and future Campylobacter challenges? Speakers from the Food Standards Agency, British Poultry Association, University of Reading and Christian Medical College 🗣️🗣️ #CampyUK2025 @microbiologysociety.org @ineosoxford.bsky.social @biology.ox.ac.uk
September 24, 2025 at 4:07 PM
Panel discussion time - what are the current and future Campylobacter challenges? Speakers from the Food Standards Agency, British Poultry Association, University of Reading and Christian Medical College 🗣️🗣️ #CampyUK2025 @microbiologysociety.org @ineosoxford.bsky.social @biology.ox.ac.uk
Reposted by Broncio Aguilar-Sanjuan
Final talk of the day from the fabulous Marian Dawkins representing @ox.ac.uk . Interdisciplinary methods tell us that chickens infected with Campylobacter behave differently to those which are not 🐓‼️ #CampyUK2025 @microbiologysociety.org @ineosoxford.bsky.social @biology.ox.ac.uk
September 24, 2025 at 3:58 PM
Final talk of the day from the fabulous Marian Dawkins representing @ox.ac.uk . Interdisciplinary methods tell us that chickens infected with Campylobacter behave differently to those which are not 🐓‼️ #CampyUK2025 @microbiologysociety.org @ineosoxford.bsky.social @biology.ox.ac.uk
Reposted by Broncio Aguilar-Sanjuan
@microbiolocris.bsky.social presents her findings of C. jejuni ST-52 emergence and survival from farm to fork in the Danish food chain 🍔🍴 #CampyUK2025 @microbiologysociety.org @ineosoxford.bsky.social @biology.ox.ac.uk
September 24, 2025 at 2:38 PM
@microbiolocris.bsky.social presents her findings of C. jejuni ST-52 emergence and survival from farm to fork in the Danish food chain 🍔🍴 #CampyUK2025 @microbiologysociety.org @ineosoxford.bsky.social @biology.ox.ac.uk
Reposted by Broncio Aguilar-Sanjuan
Are antibiotics a dead parrot? 🦜Prof Aidan Taylor kicks off the ‘From farm to fork’ session discussing Campylobacter AMR and vaccine development 🧫💉 #CampyUK2025 @microbiologysociety.org @ineosoxford.bsky.social @biology.ox.ac.uk
September 24, 2025 at 1:22 PM
Are antibiotics a dead parrot? 🦜Prof Aidan Taylor kicks off the ‘From farm to fork’ session discussing Campylobacter AMR and vaccine development 🧫💉 #CampyUK2025 @microbiologysociety.org @ineosoxford.bsky.social @biology.ox.ac.uk
Reposted by Broncio Aguilar-Sanjuan
Another speaker sponsored by @microbiologysociety.org , Prof Sitara Ajjampur talks about age and exposure to infected poultry in backyard chicken flocks as determinants of Campylobacter infections in children in rural south India 🐓🇮🇳 #CampyUK2025 @ineosoxford.bsky.social @biology.ox.ac.uk
September 24, 2025 at 1:17 PM
Another speaker sponsored by @microbiologysociety.org , Prof Sitara Ajjampur talks about age and exposure to infected poultry in backyard chicken flocks as determinants of Campylobacter infections in children in rural south India 🐓🇮🇳 #CampyUK2025 @ineosoxford.bsky.social @biology.ox.ac.uk
Reposted by Broncio Aguilar-Sanjuan
@sheppardlab.bsky.social collaborator Francesca Schiaffino, sponsored by @microbiologysociety.org explains patterns in persistent Campylobacter infections in LMICs, using data from Peru to investigate complex long-term carriage 🐓🇵🇪 #CampyUK2025 @ineosoxford.bsky.social @biology.ox.ac.uk
September 24, 2025 at 12:48 PM
@sheppardlab.bsky.social collaborator Francesca Schiaffino, sponsored by @microbiologysociety.org explains patterns in persistent Campylobacter infections in LMICs, using data from Peru to investigate complex long-term carriage 🐓🇵🇪 #CampyUK2025 @ineosoxford.bsky.social @biology.ox.ac.uk
Reposted by Broncio Aguilar-Sanjuan
Pleased to have hosted our workshop “Python Essentials with Git for Data Analysis” at the Weston Library in Oxford — a superb venue for two great days of learning.
A huge thank you to our organisers, instructors, and helpers for making this workshop possible!
#Oxford #Reproducibility #Carpentries
A huge thank you to our organisers, instructors, and helpers for making this workshop possible!
#Oxford #Reproducibility #Carpentries
September 24, 2025 at 1:02 PM
Pleased to have hosted our workshop “Python Essentials with Git for Data Analysis” at the Weston Library in Oxford — a superb venue for two great days of learning.
A huge thank you to our organisers, instructors, and helpers for making this workshop possible!
#Oxford #Reproducibility #Carpentries
A huge thank you to our organisers, instructors, and helpers for making this workshop possible!
#Oxford #Reproducibility #Carpentries
Reposted by Broncio Aguilar-Sanjuan
A warm welcome from the head of @biology.ox.ac.uk Prof Martin Maiden and a thank you to our sponsors @microbiologysociety.org, Don Whitley Scientific and @genewiz.bsky.social
September 24, 2025 at 12:04 PM
A warm welcome from the head of @biology.ox.ac.uk Prof Martin Maiden and a thank you to our sponsors @microbiologysociety.org, Don Whitley Scientific and @genewiz.bsky.social
Reposted by Broncio Aguilar-Sanjuan
Our very own @sheppardlab.bsky.social DPhil candidate Amy Douglas representing the @ukhsa.bsky.social giving us some Campy stats 🤩🤩🤩 #CampyUK2025 @ineosoxford.bsky.social @biology.ox.ac.uk
September 24, 2025 at 12:05 PM
Our very own @sheppardlab.bsky.social DPhil candidate Amy Douglas representing the @ukhsa.bsky.social giving us some Campy stats 🤩🤩🤩 #CampyUK2025 @ineosoxford.bsky.social @biology.ox.ac.uk
Reposted by Broncio Aguilar-Sanjuan
Fascinating talk from keynote speaker Dr Christine Szymanski about how Campylobacter jejuni has evolved to colonise and survive the breastfed infant gut #CampyUK2025 @ineosoxford.bsky.social @biology.ox.ac.uk
September 24, 2025 at 12:04 PM
Fascinating talk from keynote speaker Dr Christine Szymanski about how Campylobacter jejuni has evolved to colonise and survive the breastfed infant gut #CampyUK2025 @ineosoxford.bsky.social @biology.ox.ac.uk
Reposted by Broncio Aguilar-Sanjuan
And we’re off! Excited for a day full of all things Campy. The Sheppard lab @sheppardlab.bsky.social welcomes everyone to CampyUK, the first conference in the new Life and Mind Building @ox.ac.uk
September 24, 2025 at 12:03 PM
And we’re off! Excited for a day full of all things Campy. The Sheppard lab @sheppardlab.bsky.social welcomes everyone to CampyUK, the first conference in the new Life and Mind Building @ox.ac.uk
Reposted by Broncio Aguilar-Sanjuan