breesheyrh.bsky.social
@breesheyrh.bsky.social
Reposted
1960 ASBs are strong candidates for causally altering human traits: they’re in ChIP-Seq peaks & strengthen/weaken TF motifs in agreement with TF affinity change & are evolutionarily conserved & enriched for trait associations & eQTLs
Fab collaboration w/ Breeshey Roskams-Hieter & Øyvind Almelid 2/2
January 21, 2025 at 8:03 PM
Reposted
What DNA variants alter transcription factor (TF) binding affinity? Here, we describe a new workflow baal-nf. We used it to trawl through 6017 ChIP-Seq data sets for 558 TFs and 46 genotyped cell lines, finding 298,783 allele-specific binding sites (ASBs).
www.biorxiv.org/content/10.1...
1/2
January 21, 2025 at 8:02 PM