Explore more here!
🔗 cartograplant.org 9/9 @jillwegrzyn.bsky.social @meghanmyles.bsky.social

CartograPlant is actively expanding:
🔄 Two-way integration with the European Variation Archive
📦 Support for pangenomes, structural variants, and high-throughput phenotyping
🌐 Enhanced interoperability with primary repositories 8/n

CartograPlant offers workflows with NextFlow, GEMMA, LFMM2, and more—plus PCA, marker filtering, and population structure inference with fastSTRUCTURE.
⚙️📈 7/n

CartograPlant supports both model and non-model species, including forest trees, crops, and species of conservation interest. It’s also integrated with citizen science platforms like TreeSnap. 6/n
📱🌳🧑‍🔬

Researchers can explore over 25 million individuals across 846 species from 400+ studies—all georeferenced and standardized for cross-study synthesis. 5/n
📊📍🌱

Built as a Tripal module, CartograPlant supports:
✅ FAIR data ingestion
✅ Ontology-based trait mapping
✅ Interactive map-based visualization
✅ HPC-powered workflows for GWAS, GEA, population structure, and more. 3/n

CartograPlant is a web-based platform that integrates genomic, phenotypic, and environmental data from georeferenced plant individuals. It enables scalable, reproducible eco-evolutionary analyses.
🌍🌿🧬 2/n

@mhurteau.bsky.social would be a good person to ask!

We discuss this, its implications for future use, and more in our manuscript. Comments are welcome! As always, our code is directly referenced within the main and supplemental text. (10/10)

ms: doi.org/10.1101/2024...
code: github.com/modelValidat...