Ben Noordijk
@bnoordijk.bsky.social
PhD Student @ Wageningen University | Bioinformatics | Merging machine learning with mechanistic models to understand plant resilience
New preprint!
BADDADAN mechanistically models time-series response of >1000 genes to stress by clustering first, then fitting an ODE model.
Demonstrated on real Arabidopsis data: interpretable, coherent modules, plus new and existing biological insights.
doi.org/10.1101/2025.02.18.638670
BADDADAN mechanistically models time-series response of >1000 genes to stress by clustering first, then fitting an ODE model.
Demonstrated on real Arabidopsis data: interpretable, coherent modules, plus new and existing biological insights.
doi.org/10.1101/2025.02.18.638670
February 24, 2025 at 12:47 PM
New preprint!
BADDADAN mechanistically models time-series response of >1000 genes to stress by clustering first, then fitting an ODE model.
Demonstrated on real Arabidopsis data: interpretable, coherent modules, plus new and existing biological insights.
doi.org/10.1101/2025.02.18.638670
BADDADAN mechanistically models time-series response of >1000 genes to stress by clustering first, then fitting an ODE model.
Demonstrated on real Arabidopsis data: interpretable, coherent modules, plus new and existing biological insights.
doi.org/10.1101/2025.02.18.638670