Biotite
@biotite.bsky.social
This Python package is your Swiss army knife for bioinformatics. It allows easy and fast analysis of sequence and biomolecular structure data.
Biotite 1.2 connects to the bioinformatics ecosystem with seamless interfaces to @rdkit.bsky.social, #PyMOL and @openmm.org. Below you see a simple MD simulation of lysozyme combining the interfaces to OpenMM and PyMOL. The full changelog is available at github.com/biotite-dev/... #Bioinformatics
March 16, 2025 at 12:23 PM
Biotite 1.2 connects to the bioinformatics ecosystem with seamless interfaces to @rdkit.bsky.social, #PyMOL and @openmm.org. Below you see a simple MD simulation of lysozyme combining the interfaces to OpenMM and PyMOL. The full changelog is available at github.com/biotite-dev/... #Bioinformatics
Biotite 1.2 provides new tools for the evaluation of structure predictions, namely lDDT and TM-score.
Download of structure models from @ebi.embl.org #AlphaFold DB is also possible.
#Bioinformatics
Download of structure models from @ebi.embl.org #AlphaFold DB is also possible.
#Bioinformatics
March 16, 2025 at 12:13 PM
Biotite 1.2 provides new tools for the evaluation of structure predictions, namely lDDT and TM-score.
Download of structure models from @ebi.embl.org #AlphaFold DB is also possible.
#Bioinformatics
Download of structure models from @ebi.embl.org #AlphaFold DB is also possible.
#Bioinformatics
Playing with the new WIP interface from @biotite.bsky.social to @rdkit.bsky.social. Here an AtomArray for a cyclotide protein was converted into a Mol object with a single function call. #Bioinformatics #Cheminformatics
January 1, 2025 at 10:35 AM
Playing with the new WIP interface from @biotite.bsky.social to @rdkit.bsky.social. Here an AtomArray for a cyclotide protein was converted into a Mol object with a single function call. #Bioinformatics #Cheminformatics
Biotite 1.1 is now out and unleashes Biotite's alignment functions on more data! Now you can use position-specific scoring matrices for sequence profiles and convert structures to structural alphabets, such as the popular Foldseek 3Di alphabet. github.com/biotite-dev/... #Bioinformatics
Releases · biotite-dev/biotite
A comprehensive library for computational molecular biology - biotite-dev/biotite
github.com
December 25, 2024 at 1:08 PM
Biotite 1.1 is now out and unleashes Biotite's alignment functions on more data! Now you can use position-specific scoring matrices for sequence profiles and convert structures to structural alphabets, such as the popular Foldseek 3Di alphabet. github.com/biotite-dev/... #Bioinformatics
Biotite 1.0 has been finally released! A big thanks to all contributors who helped building this package! Besides the removal of deprecated API, this packages brings support for NumPy 2.x and a brand new documentation design: www.biotite-python.org.
Biotite documentation — Biotite
www.biotite-python.org
August 27, 2024 at 12:49 PM
Biotite 1.0 has been finally released! A big thanks to all contributors who helped building this package! Besides the removal of deprecated API, this packages brings support for NumPy 2.x and a brand new documentation design: www.biotite-python.org.