BiGCaT Bioinformatics
@bigcat-um.social.edu.nl.ap.brid.gy
Part of the Department of Translational Genomics, Maastricht University, The Netherlands
[bridged from https://social.edu.nl/@bigcat_UM on the fediverse by https://fed.brid.gy/ ]
[bridged from https://social.edu.nl/@bigcat_UM on the fediverse by https://fed.brid.gy/ ]
Reposted by BiGCaT Bioinformatics
the BridgeDb Tiwid project ("this is where identifiers die") collects outdated identifiers, and when known, provides information when the identifiers was retired (stopped working) and if there is a replacement identifier.
In the past week two new features got added. ORCIDs can now be provided […]
In the past week two new features got added. ORCIDs can now be provided […]
Original post on fosstodon.org
fosstodon.org
January 14, 2025 at 10:48 AM
the BridgeDb Tiwid project ("this is where identifiers die") collects outdated identifiers, and when known, provides information when the identifiers was retired (stopped working) and if there is a replacement identifier.
In the past week two new features got added. ORCIDs can now be provided […]
In the past week two new features got added. ORCIDs can now be provided […]
new paper: "A collaborative network analysis for the interpretation of transcriptomics data in Huntington’s disease" https://doi.org/10.1038/s41598-025-85580-4
"our study shows that collaborative network analysis approaches are well-suited to study rare […]
[Original post on social.edu.nl]
"our study shows that collaborative network analysis approaches are well-suited to study rare […]
[Original post on social.edu.nl]
January 9, 2025 at 11:43 AM
new paper: "A collaborative network analysis for the interpretation of transcriptomics data in Huntington’s disease" https://doi.org/10.1038/s41598-025-85580-4
"our study shows that collaborative network analysis approaches are well-suited to study rare […]
[Original post on social.edu.nl]
"our study shows that collaborative network analysis approaches are well-suited to study rare […]
[Original post on social.edu.nl]
new conference proceedings: "BioDataFuse: Enhancing data interoperability through modular queries and knowledge graph construction" https://ceur-ws.org/Vol-3890/ https://ceur-ws.org/Vol-3890/paper-23.pdf
#rdf #sparql #bioinformatics #python
#rdf #sparql #bioinformatics #python
CEUR-WS.org/Vol-3890 - 15th International Conference on Semantic Web Applications and Tools for Health Care
and Life Sciences 2024
ceur-ws.org
January 7, 2025 at 3:51 AM
new conference proceedings: "BioDataFuse: Enhancing data interoperability through modular queries and knowledge graph construction" https://ceur-ws.org/Vol-3890/ https://ceur-ws.org/Vol-3890/paper-23.pdf
#rdf #sparql #bioinformatics #python
#rdf #sparql #bioinformatics #python
Reposted by BiGCaT Bioinformatics
a new BridgeDb metabolite ID mapping database has been released, compatible with PathVisio 3.3: https://doi.org/10.6084/m9.figshare.28030427.v1
To support #sr24 #metakids pathway curation, see https://social.edu.nl/@egonw/113599062833652441
To support #sr24 #metakids pathway curation, see https://social.edu.nl/@egonw/113599062833652441
Metabolite BridgeDb ID Mapping Database (20241215)
BridgeDb ID mapping database for metabolites, using HMDB 5.0 (Release of April 2024), ChEBI (Release of December 2024), and Wikidata (15 December 2024) as data sources.
figshare.com
December 15, 2024 at 7:48 PM
a new BridgeDb metabolite ID mapping database has been released, compatible with PathVisio 3.3: https://doi.org/10.6084/m9.figshare.28030427.v1
To support #sr24 #metakids pathway curation, see https://social.edu.nl/@egonw/113599062833652441
To support #sr24 #metakids pathway curation, see https://social.edu.nl/@egonw/113599062833652441
On Tuesday, December 3rd, 2024, our Department of Translational Genomics hosted its very first TGX Conference Day!
The event showcased the incredible research being conducted within our five key research lines:
🔬 Clinical Genomics
🥗 Nutrigenomics
🧪 In Vitro Assays
☣️ Toxicogenomics
💻 […]
The event showcased the incredible research being conducted within our five key research lines:
🔬 Clinical Genomics
🥗 Nutrigenomics
🧪 In Vitro Assays
☣️ Toxicogenomics
💻 […]
Original post on social.edu.nl
social.edu.nl
December 14, 2024 at 4:28 PM
On Tuesday, December 3rd, 2024, our Department of Translational Genomics hosted its very first TGX Conference Day!
The event showcased the incredible research being conducted within our five key research lines:
🔬 Clinical Genomics
🥗 Nutrigenomics
🧪 In Vitro Assays
☣️ Toxicogenomics
💻 […]
The event showcased the incredible research being conducted within our five key research lines:
🔬 Clinical Genomics
🥗 Nutrigenomics
🧪 In Vitro Assays
☣️ Toxicogenomics
💻 […]
Reposted by BiGCaT Bioinformatics
the Serious Request fundraiser is nearing. The DJs lock themselves up in just under two weeks and on the 16th I start a week long working on metabolic disease related pathways, joined by already three others: https://sr24.wikipathways.org/
But the preparation […]
[Original post on social.edu.nl]
But the preparation […]
[Original post on social.edu.nl]
December 5, 2024 at 7:56 AM
the Serious Request fundraiser is nearing. The DJs lock themselves up in just under two weeks and on the 16th I start a week long working on metabolic disease related pathways, joined by already three others: https://sr24.wikipathways.org/
But the preparation […]
[Original post on social.edu.nl]
But the preparation […]
[Original post on social.edu.nl]
two publisher-version papers have become green Open Access via the Taverne clause:
- "A template wizard for the cocreation of machine-readable data-reporting to harmonize the evaluation of (nano)materials" https://doi.org/10.1038/s41596-024-00993-1 -> free PDF at […]
- "A template wizard for the cocreation of machine-readable data-reporting to harmonize the evaluation of (nano)materials" https://doi.org/10.1038/s41596-024-00993-1 -> free PDF at […]
Original post on social.edu.nl
social.edu.nl
December 4, 2024 at 11:45 AM
two publisher-version papers have become green Open Access via the Taverne clause:
- "A template wizard for the cocreation of machine-readable data-reporting to harmonize the evaluation of (nano)materials" https://doi.org/10.1038/s41596-024-00993-1 -> free PDF at […]
- "A template wizard for the cocreation of machine-readable data-reporting to harmonize the evaluation of (nano)materials" https://doi.org/10.1038/s41596-024-00993-1 -> free PDF at […]
#introduction
This account is for the bioinformatics team at FHML, Maastricht University. You can find some of them on Mastodon:
- Susan Coort: @susancoort - Marvin Martens: @Marvin
But also some of the projects we have been involved in:
- BridgeDb: @bridgedb
- WikiPathways: @wikipathways
- […]
This account is for the bioinformatics team at FHML, Maastricht University. You can find some of them on Mastodon:
- Susan Coort: @susancoort - Marvin Martens: @Marvin
But also some of the projects we have been involved in:
- BridgeDb: @bridgedb
- WikiPathways: @wikipathways
- […]
Original post on social.edu.nl
social.edu.nl
November 20, 2024 at 10:22 AM
#introduction
This account is for the bioinformatics team at FHML, Maastricht University. You can find some of them on Mastodon:
- Susan Coort: @susancoort - Marvin Martens: @Marvin
But also some of the projects we have been involved in:
- BridgeDb: @bridgedb
- WikiPathways: @wikipathways
- […]
This account is for the bioinformatics team at FHML, Maastricht University. You can find some of them on Mastodon:
- Susan Coort: @susancoort - Marvin Martens: @Marvin
But also some of the projects we have been involved in:
- BridgeDb: @bridgedb
- WikiPathways: @wikipathways
- […]
we have just enabled the Bridgy Fed bridge to Bluesky: https://bsky.app/profile/bigcat-UM.social.edu.nl.ap.brid.gy
November 20, 2024 at 10:00 AM
we have just enabled the Bridgy Fed bridge to Bluesky: https://bsky.app/profile/bigcat-UM.social.edu.nl.ap.brid.gy