Girma Bedada
@bgirma.bsky.social
Researcher @SLU Uppsala
Plant computational genomics, pre-breeding and biodiversity informatics, evolutionary | population | comparative genomics and transcripotomics, Stress-Omics, Phenomics, 🌱
Sciences
Plant computational genomics, pre-breeding and biodiversity informatics, evolutionary | population | comparative genomics and transcripotomics, Stress-Omics, Phenomics, 🌱
Sciences
Reposted by Girma Bedada
💻🧬🌾 Genome-to-Phenome algorithms can be used to estimate genotype-specific parameters in ecophysiological #crop models to develop robust predictions
by Pratishtha Poudel, Bryan Naidenov, Charles Chen, Phillip Alderman, Stephen Welch
https://buff.ly/3XO8BZi #PlantScience 🧪 #genome #phenome
by Pratishtha Poudel, Bryan Naidenov, Charles Chen, Phillip Alderman, Stephen Welch
https://buff.ly/3XO8BZi #PlantScience 🧪 #genome #phenome
Integrating genomic prediction and genotype specific parameter estimation in ecophysiological models: overview and perspectives
Abstract. The Genome-to-Phenome (G2P) problem is one of the highest-priority challenges in applied biology. Ecophysiological crop models (ECM) and genomic
buff.ly
December 17, 2024 at 5:29 PM
💻🧬🌾 Genome-to-Phenome algorithms can be used to estimate genotype-specific parameters in ecophysiological #crop models to develop robust predictions
by Pratishtha Poudel, Bryan Naidenov, Charles Chen, Phillip Alderman, Stephen Welch
https://buff.ly/3XO8BZi #PlantScience 🧪 #genome #phenome
by Pratishtha Poudel, Bryan Naidenov, Charles Chen, Phillip Alderman, Stephen Welch
https://buff.ly/3XO8BZi #PlantScience 🧪 #genome #phenome
Reposted by Girma Bedada
New research shows modern humans leaving Africa went extinct multiple times and they may have been helped to survive by interbreeding with Neanderthals - whose may have impimproved our immune system, healing, focus and ability to be morning people! 🧪https://www.bbc.co.uk/news/articles/cwydgyy8120o
December 12, 2024 at 8:00 PM
New research shows modern humans leaving Africa went extinct multiple times and they may have been helped to survive by interbreeding with Neanderthals - whose may have impimproved our immune system, healing, focus and ability to be morning people! 🧪https://www.bbc.co.uk/news/articles/cwydgyy8120o
Reposted by Girma Bedada
OrthoHMM: Improved Inference of Ortholog Groups using Hidden Markov Models https://www.biorxiv.org/content/10.1101/2024.12.07.627370v1 🧬🖥️🧪 https://github.com/JLSteenwyk/orthohmm from @jlsteenwyk.bsky.social et al
December 13, 2024 at 4:30 PM
OrthoHMM: Improved Inference of Ortholog Groups using Hidden Markov Models https://www.biorxiv.org/content/10.1101/2024.12.07.627370v1 🧬🖥️🧪 https://github.com/JLSteenwyk/orthohmm from @jlsteenwyk.bsky.social et al
Reposted by Girma Bedada
This is pretty dope. Add pylustrator.start() at the top of a script and your plots are interactively scalable, composable, movable, etc with your mouse www.youtube.com/watch?v=xXPI... pylustrator.readthedocs.io/en/latest/ h/t @tommytang.bsky.social
pylustrator demonstration
YouTube video by Randrian42
www.youtube.com
November 27, 2024 at 7:48 PM
This is pretty dope. Add pylustrator.start() at the top of a script and your plots are interactively scalable, composable, movable, etc with your mouse www.youtube.com/watch?v=xXPI... pylustrator.readthedocs.io/en/latest/ h/t @tommytang.bsky.social
Reposted by Girma Bedada
A gentle introduction to pangenomics. #Pangenomics #BriefingsInBioinformatics 🧬🖥️🧪
academic.oup.com/bib/article/...
academic.oup.com/bib/article/...
A gentle introduction to pangenomics
Abstract. Pangenomes have emerged in response to limitations associated with traditional linear reference genomes. In contrast to a traditional reference t
academic.oup.com
November 18, 2024 at 9:52 PM
A gentle introduction to pangenomics. #Pangenomics #BriefingsInBioinformatics 🧬🖥️🧪
academic.oup.com/bib/article/...
academic.oup.com/bib/article/...
Reposted by Girma Bedada
Cluster-efficient pangenome graph construction with nf-core/pangenome https://academic.oup.com/bioinformatics/article/40/11/btae609/7821182 🧬🖥️🧪 https://github.com/nf-core/pangenome
November 16, 2024 at 4:44 PM
Cluster-efficient pangenome graph construction with nf-core/pangenome https://academic.oup.com/bioinformatics/article/40/11/btae609/7821182 🧬🖥️🧪 https://github.com/nf-core/pangenome
Reposted by Girma Bedada
Crossover recombination between homologous chromosomes in meiosis: recent progress and remaining mysteries. #CrossoverRecombination #Chromosomes #Meiosis #TrendsInGenetics
www.cell.com/trends/genet...
www.cell.com/trends/genet...
Crossover recombination between homologous chromosomes in meiosis: recent progress and remaining mysteries
Crossing over between homologous chromosomes in meiosis is essential in most eukaryotes
to produce gametes with the correct ploidy. Meiotic crossovers are typically evenly
spaced, with each homolog pa...
www.cell.com
November 13, 2024 at 4:23 PM
Crossover recombination between homologous chromosomes in meiosis: recent progress and remaining mysteries. #CrossoverRecombination #Chromosomes #Meiosis #TrendsInGenetics
www.cell.com/trends/genet...
www.cell.com/trends/genet...
Reposted by Girma Bedada
Structural variation in the pangenome of wild and domesticated barley. #Barley #Genomics #StructuralVariants #Pangenome #Nature #BioSky #SciSky 🧪
www.nature.com/articles/s41...
www.nature.com/articles/s41...
Structural variation in the pangenome of wild and domesticated barley - Nature
A pangenome analysis of 76 wild and domesticated barley accessions in combination with short-read sequence data of 1,315 barley genotypes indicates that allelic diversity at structurally complex loci ...
www.nature.com
November 16, 2024 at 11:29 AM
Structural variation in the pangenome of wild and domesticated barley. #Barley #Genomics #StructuralVariants #Pangenome #Nature #BioSky #SciSky 🧪
www.nature.com/articles/s41...
www.nature.com/articles/s41...
November 16, 2024 at 11:36 AM