Aysu Okbay
aysuo.bsky.social
Aysu Okbay
@aysuo.bsky.social
In the next few weeks, we will start sharing the PGIs with the participating datasets, who will make them available as read-to-use variables through their own data-sharing procedures. Stay tuned! (9/9)
May 20, 2025 at 10:18 AM
We have updated the repository’s User Guide to highlight interpretational issues we view as especially important:
www.biorxiv.org/content/bior...
We also provide updated FAQs that provide information on the Repository and PGIs:
www.biorxiv.org/content/bior... (8/9)
www.biorxiv.org
May 20, 2025 at 10:18 AM
It is essential to recall that “causal” does not mean “immutable.” Genetic influences often operate through modifiable environmental pathways. To avoid overly deterministic interpretations, PGI associations should be analyzed and presented with appropriate nuance. (7/9)
May 20, 2025 at 10:18 AM
We provide an analytic correction for these two sources of attenuation that enhances interpretability and cross-study comparability. (6/9)
May 20, 2025 at 10:18 AM
We also develop a theoretical framework clarifying how to interpret coefficients from regressions that control for parental PGIs. We identify two distinct sources of attenuation: sampling error in the SNP weights, and bias due to divergence between the between- and within-family GWAS estimands.(5/9)
May 20, 2025 at 10:18 AM
In 11 datasets that include first-degree relatives, and we infer missing parental PGIs using Mendelian imputation. We include these imputed parental PGIs in the new data release, increasing the number of datasets where parental PGIs can be controlled for in analyses to identify causal effects (4/9)
May 20, 2025 at 10:18 AM
We now obtain the SNP weights using SBayesR (as opposed to LDpred) using a larger set of SNPs (~2.9 mil as opposed to ~1.2mil HapMap3 SNPs) resulting in gains in predictive power for most phenotypes. (3/9)
May 20, 2025 at 10:18 AM
For 16 phenotypes from the first release, we integrate new GWAS data into the meta-analyses. For 45 out of 61 phenotypes, the meta-analyses include 23andMe GWAS, improving predictive power compared to what can be obtained with publicly available summary statistics. (2/9)
May 20, 2025 at 10:18 AM
The repository now includes PGIs for 61 phenotypes (up from 47), spanning additional health, behavioral, and demographic traits. Participating datasets are up from 11 to 20. (1/9)
May 20, 2025 at 10:18 AM
In the sense that an exogenous shock to the environment is found have heterogenous effects, yes, but that's about it :) We found, in Sweden, that among women from high SES families, an increase in compulsory schooling had a larger effect on the adult earnings of those with lower EA PGI
October 31, 2024 at 11:20 AM