Applied Systems Biology
@appsysbio.bsky.social
Leibniz Institute: Hans Knöll Institute
Jena
The research group Applied Systems Biology is concerned with the mathematical modeling and computer simulation of infection processes caused by human-pathogenic fungi.
Jena
The research group Applied Systems Biology is concerned with the mathematical modeling and computer simulation of infection processes caused by human-pathogenic fungi.
New publication:
"Selective activation of dynamics in kinetically frozen supramolecular polymer bottlebrush assemblies"
#hki-Jena #BioimageAnalysisTools #SupramolecularPolymers
#PolymerChemistry #Biomaterials #Nanotechnology #DrugDelivery #SoftMatter
onlinelibrary.wiley.com/doi/10.1002/...
"Selective activation of dynamics in kinetically frozen supramolecular polymer bottlebrush assemblies"
#hki-Jena #BioimageAnalysisTools #SupramolecularPolymers
#PolymerChemistry #Biomaterials #Nanotechnology #DrugDelivery #SoftMatter
onlinelibrary.wiley.com/doi/10.1002/...
Selective Activation of Dynamics in Kinetically Frozen Supramolecular Polymer Bottlebrush Assemblies
Static at rest—dynamic on demand: Although supramolecular polymers are known for their dynamic nature, this study investigates the dynamics of amphiphilic assemblies based on polymer-modified benzene...
onlinelibrary.wiley.com
October 16, 2025 at 9:55 AM
New publication:
"Selective activation of dynamics in kinetically frozen supramolecular polymer bottlebrush assemblies"
#hki-Jena #BioimageAnalysisTools #SupramolecularPolymers
#PolymerChemistry #Biomaterials #Nanotechnology #DrugDelivery #SoftMatter
onlinelibrary.wiley.com/doi/10.1002/...
"Selective activation of dynamics in kinetically frozen supramolecular polymer bottlebrush assemblies"
#hki-Jena #BioimageAnalysisTools #SupramolecularPolymers
#PolymerChemistry #Biomaterials #Nanotechnology #DrugDelivery #SoftMatter
onlinelibrary.wiley.com/doi/10.1002/...
🎉 SBMI 2025 was an inspiring experience!
It has been an enriching experience, discussions, and new collaborations
Thanks to all participants for their contributions. 🙏
✈️ Wishing everyone a safe journey home, see you at the next IbSB2026!
#MicrobialInfections #ScientificCommunity#HKIJena
It has been an enriching experience, discussions, and new collaborations
Thanks to all participants for their contributions. 🙏
✈️ Wishing everyone a safe journey home, see you at the next IbSB2026!
#MicrobialInfections #ScientificCommunity#HKIJena
September 19, 2025 at 3:40 PM
🎉 SBMI 2025 was an inspiring experience!
It has been an enriching experience, discussions, and new collaborations
Thanks to all participants for their contributions. 🙏
✈️ Wishing everyone a safe journey home, see you at the next IbSB2026!
#MicrobialInfections #ScientificCommunity#HKIJena
It has been an enriching experience, discussions, and new collaborations
Thanks to all participants for their contributions. 🙏
✈️ Wishing everyone a safe journey home, see you at the next IbSB2026!
#MicrobialInfections #ScientificCommunity#HKIJena
🎉 We’re excited to kick off SBMI 2025 in Jena!
Scientists meet to discuss microbiology, immunology & systems biology.
🔗 asb-conference.hki-jena.de
#SBMI2025 #SystemsBiology #Conference
Scientists meet to discuss microbiology, immunology & systems biology.
🔗 asb-conference.hki-jena.de
#SBMI2025 #SystemsBiology #Conference
September 18, 2025 at 10:22 AM
🎉 We’re excited to kick off SBMI 2025 in Jena!
Scientists meet to discuss microbiology, immunology & systems biology.
🔗 asb-conference.hki-jena.de
#SBMI2025 #SystemsBiology #Conference
Scientists meet to discuss microbiology, immunology & systems biology.
🔗 asb-conference.hki-jena.de
#SBMI2025 #SystemsBiology #Conference
🎓 PhD position available!
Automated image processing of immune interactions in organ-on-chip models @ Microverse Cluster (Prof. Figge, HKI Jena).
🗓️ Apply by Oct 5, 2025
🔗 www.microverse-cluster.de/files/conten...
#PhDPosition #Microverse #BioimageAnalysis
Automated image processing of immune interactions in organ-on-chip models @ Microverse Cluster (Prof. Figge, HKI Jena).
🗓️ Apply by Oct 5, 2025
🔗 www.microverse-cluster.de/files/conten...
#PhDPosition #Microverse #BioimageAnalysis
www.microverse-cluster.de
September 15, 2025 at 12:27 PM
🎓 PhD position available!
Automated image processing of immune interactions in organ-on-chip models @ Microverse Cluster (Prof. Figge, HKI Jena).
🗓️ Apply by Oct 5, 2025
🔗 www.microverse-cluster.de/files/conten...
#PhDPosition #Microverse #BioimageAnalysis
Automated image processing of immune interactions in organ-on-chip models @ Microverse Cluster (Prof. Figge, HKI Jena).
🗓️ Apply by Oct 5, 2025
🔗 www.microverse-cluster.de/files/conten...
#PhDPosition #Microverse #BioimageAnalysis
🎉Exciting news from Applied Systems Biology @ HKI 🎉
We’re welcoming three new members:
• Lennart Köhler — Technical Assistant
• Behnaz Asiabanha — Master student and Assistant
• Mariia Kolchanova — Master student and Assistant
Great to have you on board! 🚀
We’re welcoming three new members:
• Lennart Köhler — Technical Assistant
• Behnaz Asiabanha — Master student and Assistant
• Mariia Kolchanova — Master student and Assistant
Great to have you on board! 🚀
August 27, 2025 at 9:35 AM
🎉Exciting news from Applied Systems Biology @ HKI 🎉
We’re welcoming three new members:
• Lennart Köhler — Technical Assistant
• Behnaz Asiabanha — Master student and Assistant
• Mariia Kolchanova — Master student and Assistant
Great to have you on board! 🚀
We’re welcoming three new members:
• Lennart Köhler — Technical Assistant
• Behnaz Asiabanha — Master student and Assistant
• Mariia Kolchanova — Master student and Assistant
Great to have you on board! 🚀
🎙️ Excited to welcome Prof. Somenath Bakshi (University of Cambridge) as an invited speaker at SBMI 2025!
www.bakshilab.net
Early Bird Registration extended!
Reduced registration fee until:
🗓️ 20 August 2025 at 23:59 (CEST)
asb-conference.hki-jena.de
#SBMI2025 #SystemsBiology #Conference
www.bakshilab.net
Early Bird Registration extended!
Reduced registration fee until:
🗓️ 20 August 2025 at 23:59 (CEST)
asb-conference.hki-jena.de
#SBMI2025 #SystemsBiology #Conference
August 15, 2025 at 12:18 PM
🎙️ Excited to welcome Prof. Somenath Bakshi (University of Cambridge) as an invited speaker at SBMI 2025!
www.bakshilab.net
Early Bird Registration extended!
Reduced registration fee until:
🗓️ 20 August 2025 at 23:59 (CEST)
asb-conference.hki-jena.de
#SBMI2025 #SystemsBiology #Conference
www.bakshilab.net
Early Bird Registration extended!
Reduced registration fee until:
🗓️ 20 August 2025 at 23:59 (CEST)
asb-conference.hki-jena.de
#SBMI2025 #SystemsBiology #Conference
📢 New article from our team!
A model of neutrophil transendothelial migration at single-cell resolution has just been published in npj Systems Biology & Applications.
🔗 www.nature.com/articles/s41...
#SystemsBiology #Publication#Neutrophils #ComputationalModeling #AppliedSystemsBiology #HKIJena
A model of neutrophil transendothelial migration at single-cell resolution has just been published in npj Systems Biology & Applications.
🔗 www.nature.com/articles/s41...
#SystemsBiology #Publication#Neutrophils #ComputationalModeling #AppliedSystemsBiology #HKIJena
Complex-mediated evasion: modeling defense against antimicrobial peptides with application to human-pathogenic fungus Candida albicans - npj Systems Biology and Applications
npj Systems Biology and Applications - Complex-mediated evasion: modeling defense against antimicrobial peptides with application to human-pathogenic fungus Candida albicans
www.nature.com
July 22, 2025 at 1:38 PM
📢 New article from our team!
A model of neutrophil transendothelial migration at single-cell resolution has just been published in npj Systems Biology & Applications.
🔗 www.nature.com/articles/s41...
#SystemsBiology #Publication#Neutrophils #ComputationalModeling #AppliedSystemsBiology #HKIJena
A model of neutrophil transendothelial migration at single-cell resolution has just been published in npj Systems Biology & Applications.
🔗 www.nature.com/articles/s41...
#SystemsBiology #Publication#Neutrophils #ComputationalModeling #AppliedSystemsBiology #HKIJena
Final call for abstracts!!
Submit your abstracts for (SBMI 2025) by:
🗓️ July 15, 2025 at 23:59 (CEST
Take advantage of Early Bird Registration until:
🗓️ July 31, 2025 at 23:59 (CEST)
🔗 asb-conference.hki-jena.de
#SBMI2025 #CallForAbstracts #SystemsBiology
Submit your abstracts for (SBMI 2025) by:
🗓️ July 15, 2025 at 23:59 (CEST
Take advantage of Early Bird Registration until:
🗓️ July 31, 2025 at 23:59 (CEST)
🔗 asb-conference.hki-jena.de
#SBMI2025 #CallForAbstracts #SystemsBiology
July 11, 2025 at 8:13 AM
Final call for abstracts!!
Submit your abstracts for (SBMI 2025) by:
🗓️ July 15, 2025 at 23:59 (CEST
Take advantage of Early Bird Registration until:
🗓️ July 31, 2025 at 23:59 (CEST)
🔗 asb-conference.hki-jena.de
#SBMI2025 #CallForAbstracts #SystemsBiology
Submit your abstracts for (SBMI 2025) by:
🗓️ July 15, 2025 at 23:59 (CEST
Take advantage of Early Bird Registration until:
🗓️ July 31, 2025 at 23:59 (CEST)
🔗 asb-conference.hki-jena.de
#SBMI2025 #CallForAbstracts #SystemsBiology
Reposted by Applied Systems Biology
📢 SBMI 2025
Join us at the 8th International Symposium "Systems Biology of Microbial Infection", Sept 18–19, 2025 in Jena
Submit your abstract & consider applying for a Tandem-Talk!
Info & speakers: asb-conference.hki-jena.de
#SystemsBiology #InfectionBiology #BioimageAnalysisTools
Join us at the 8th International Symposium "Systems Biology of Microbial Infection", Sept 18–19, 2025 in Jena
Submit your abstract & consider applying for a Tandem-Talk!
Info & speakers: asb-conference.hki-jena.de
#SystemsBiology #InfectionBiology #BioimageAnalysisTools
April 15, 2025 at 12:03 PM
📢 SBMI 2025
Join us at the 8th International Symposium "Systems Biology of Microbial Infection", Sept 18–19, 2025 in Jena
Submit your abstract & consider applying for a Tandem-Talk!
Info & speakers: asb-conference.hki-jena.de
#SystemsBiology #InfectionBiology #BioimageAnalysisTools
Join us at the 8th International Symposium "Systems Biology of Microbial Infection", Sept 18–19, 2025 in Jena
Submit your abstract & consider applying for a Tandem-Talk!
Info & speakers: asb-conference.hki-jena.de
#SystemsBiology #InfectionBiology #BioimageAnalysisTools
Reposted by Applied Systems Biology
🎓 Are you a Bachelor or Master students?
📢 SBMI 2025 is free of charge for you!
Join us at the 8th International Symposium "Systems Biology of Microbial Infection",
📅 September 18–19, 2025 in Jena 🇩🇪
🔗 More info: lnkd.in/ej7w9MwH
#SystemsBiology #BioimageAnalysis #InfectionBiology
📢 SBMI 2025 is free of charge for you!
Join us at the 8th International Symposium "Systems Biology of Microbial Infection",
📅 September 18–19, 2025 in Jena 🇩🇪
🔗 More info: lnkd.in/ej7w9MwH
#SystemsBiology #BioimageAnalysis #InfectionBiology
May 5, 2025 at 3:37 PM
🎓 Are you a Bachelor or Master students?
📢 SBMI 2025 is free of charge for you!
Join us at the 8th International Symposium "Systems Biology of Microbial Infection",
📅 September 18–19, 2025 in Jena 🇩🇪
🔗 More info: lnkd.in/ej7w9MwH
#SystemsBiology #BioimageAnalysis #InfectionBiology
📢 SBMI 2025 is free of charge for you!
Join us at the 8th International Symposium "Systems Biology of Microbial Infection",
📅 September 18–19, 2025 in Jena 🇩🇪
🔗 More info: lnkd.in/ej7w9MwH
#SystemsBiology #BioimageAnalysis #InfectionBiology
📢 New JIPipe tutorials now on YouTube!🎥
Learn how to build and analyze visual pipelines for bioimage data.
👉 www.youtube.com/@appliedsyst...
Feel free to share your feedback and questions!
#JIPipe #BioimageAnalysis #OpenSource
Learn how to build and analyze visual pipelines for bioimage data.
👉 www.youtube.com/@appliedsyst...
Feel free to share your feedback and questions!
#JIPipe #BioimageAnalysis #OpenSource
Applied Systems Biology
www.youtube.com
May 13, 2025 at 8:25 AM
📢 New JIPipe tutorials now on YouTube!🎥
Learn how to build and analyze visual pipelines for bioimage data.
👉 www.youtube.com/@appliedsyst...
Feel free to share your feedback and questions!
#JIPipe #BioimageAnalysis #OpenSource
Learn how to build and analyze visual pipelines for bioimage data.
👉 www.youtube.com/@appliedsyst...
Feel free to share your feedback and questions!
#JIPipe #BioimageAnalysis #OpenSource
📢 Excited to welcome Liliana Angeles Martinez to our team at Applied Systems Biology!
Her expertise in cell–cell interactions and spatio-temporal modeling brings valuable new perspectives to our research.
#SystemsBiology #CellInteractions #SpatioTemporalModeling #HKIJena #AppliedSystemsBiology
Her expertise in cell–cell interactions and spatio-temporal modeling brings valuable new perspectives to our research.
#SystemsBiology #CellInteractions #SpatioTemporalModeling #HKIJena #AppliedSystemsBiology
May 8, 2025 at 11:01 AM
📢 Excited to welcome Liliana Angeles Martinez to our team at Applied Systems Biology!
Her expertise in cell–cell interactions and spatio-temporal modeling brings valuable new perspectives to our research.
#SystemsBiology #CellInteractions #SpatioTemporalModeling #HKIJena #AppliedSystemsBiology
Her expertise in cell–cell interactions and spatio-temporal modeling brings valuable new perspectives to our research.
#SystemsBiology #CellInteractions #SpatioTemporalModeling #HKIJena #AppliedSystemsBiology
🎓 Are you a Bachelor or Master students?
📢 SBMI 2025 is free of charge for you!
Join us at the 8th International Symposium "Systems Biology of Microbial Infection",
📅 September 18–19, 2025 in Jena 🇩🇪
🔗 More info: lnkd.in/ej7w9MwH
#SystemsBiology #BioimageAnalysis #InfectionBiology
📢 SBMI 2025 is free of charge for you!
Join us at the 8th International Symposium "Systems Biology of Microbial Infection",
📅 September 18–19, 2025 in Jena 🇩🇪
🔗 More info: lnkd.in/ej7w9MwH
#SystemsBiology #BioimageAnalysis #InfectionBiology
May 5, 2025 at 3:37 PM
🎓 Are you a Bachelor or Master students?
📢 SBMI 2025 is free of charge for you!
Join us at the 8th International Symposium "Systems Biology of Microbial Infection",
📅 September 18–19, 2025 in Jena 🇩🇪
🔗 More info: lnkd.in/ej7w9MwH
#SystemsBiology #BioimageAnalysis #InfectionBiology
📢 SBMI 2025 is free of charge for you!
Join us at the 8th International Symposium "Systems Biology of Microbial Infection",
📅 September 18–19, 2025 in Jena 🇩🇪
🔗 More info: lnkd.in/ej7w9MwH
#SystemsBiology #BioimageAnalysis #InfectionBiology
📢 SBMI 2025
Join us at the 8th International Symposium "Systems Biology of Microbial Infection", Sept 18–19, 2025 in Jena
Submit your abstract & consider applying for a Tandem-Talk!
Info & speakers: asb-conference.hki-jena.de
#SystemsBiology #InfectionBiology #BioimageAnalysisTools
Join us at the 8th International Symposium "Systems Biology of Microbial Infection", Sept 18–19, 2025 in Jena
Submit your abstract & consider applying for a Tandem-Talk!
Info & speakers: asb-conference.hki-jena.de
#SystemsBiology #InfectionBiology #BioimageAnalysisTools
April 15, 2025 at 12:03 PM
📢 SBMI 2025
Join us at the 8th International Symposium "Systems Biology of Microbial Infection", Sept 18–19, 2025 in Jena
Submit your abstract & consider applying for a Tandem-Talk!
Info & speakers: asb-conference.hki-jena.de
#SystemsBiology #InfectionBiology #BioimageAnalysisTools
Join us at the 8th International Symposium "Systems Biology of Microbial Infection", Sept 18–19, 2025 in Jena
Submit your abstract & consider applying for a Tandem-Talk!
Info & speakers: asb-conference.hki-jena.de
#SystemsBiology #InfectionBiology #BioimageAnalysisTools
🎉 Girl's and Boy's Day 2025
This year we were delighted to take part in the Forsche Schüler Tag/Boys' and Girls' Day by introducing five interested ninth graders (15-16 years old) to the exciting world of systems biology. 🧪🔬
#STEM #JIPipe #SystemsBiology #ScienceEducation
This year we were delighted to take part in the Forsche Schüler Tag/Boys' and Girls' Day by introducing five interested ninth graders (15-16 years old) to the exciting world of systems biology. 🧪🔬
#STEM #JIPipe #SystemsBiology #ScienceEducation
April 11, 2025 at 2:33 PM
🎉 Girl's and Boy's Day 2025
This year we were delighted to take part in the Forsche Schüler Tag/Boys' and Girls' Day by introducing five interested ninth graders (15-16 years old) to the exciting world of systems biology. 🧪🔬
#STEM #JIPipe #SystemsBiology #ScienceEducation
This year we were delighted to take part in the Forsche Schüler Tag/Boys' and Girls' Day by introducing five interested ninth graders (15-16 years old) to the exciting world of systems biology. 🧪🔬
#STEM #JIPipe #SystemsBiology #ScienceEducation
🎉 Congrats to our colleague Simone Piccioni for winning a Poster Prize at the Joint Annual Meeting 2025 of FungiNet and IMIHM XV in Würzburg! 🏆
A big shoutout for this amazing achievement! 👏
#Science #FungiNet #IMIHM #PosterPrize #InfectionResearch #BioImageAnalysis
A big shoutout for this amazing achievement! 👏
#Science #FungiNet #IMIHM #PosterPrize #InfectionResearch #BioImageAnalysis
April 2, 2025 at 9:36 AM
🎉 Congrats to our colleague Simone Piccioni for winning a Poster Prize at the Joint Annual Meeting 2025 of FungiNet and IMIHM XV in Würzburg! 🏆
A big shoutout for this amazing achievement! 👏
#Science #FungiNet #IMIHM #PosterPrize #InfectionResearch #BioImageAnalysis
A big shoutout for this amazing achievement! 👏
#Science #FungiNet #IMIHM #PosterPrize #InfectionResearch #BioImageAnalysis
🦠 Fungal Pathogens & Phagosome Evasion 🦠
New research explores how convergent evolution has shaped fungal effectors to penetrate host phagosomal membranes.
www.biorxiv.org/content/10.1...
#Microbiology #FungalPathogens #InfectionBiology #Research #PathogenicFungi
New research explores how convergent evolution has shaped fungal effectors to penetrate host phagosomal membranes.
www.biorxiv.org/content/10.1...
#Microbiology #FungalPathogens #InfectionBiology #Research #PathogenicFungi
Convergent evolution of a fungal effector enabling phagosome membrane penetration
The ability of pathogens to evade phagosomal killing is critical for their pathogenicity. Previously, we had identified the HscA effector protein in the clinically important fungal pathogen Aspergillu...
www.biorxiv.org
March 10, 2025 at 12:47 PM
🦠 Fungal Pathogens & Phagosome Evasion 🦠
New research explores how convergent evolution has shaped fungal effectors to penetrate host phagosomal membranes.
www.biorxiv.org/content/10.1...
#Microbiology #FungalPathogens #InfectionBiology #Research #PathogenicFungi
New research explores how convergent evolution has shaped fungal effectors to penetrate host phagosomal membranes.
www.biorxiv.org/content/10.1...
#Microbiology #FungalPathogens #InfectionBiology #Research #PathogenicFungi
🦠 New Insights into Respiratory Viral Infections 🦠
royalsocietypublishing.org/doi/10.1098/...
#Science #Biotechnology #Research #Microbiome #OrganOnChip #LungHealth
royalsocietypublishing.org/doi/10.1098/...
#Science #Biotechnology #Research #Microbiome #OrganOnChip #LungHealth
Deciphering respiratory viral infections by harnessing organ-on-chip technology to explore the gut–lung axis | Open Biology
The lung microbiome has recently gained attention for potentially affecting respiratory
viral infections, including influenza A virus, respiratory syncytial virus (RSV) and
SARS-CoV-2. We will discuss...
royalsocietypublishing.org
March 10, 2025 at 10:53 AM
🦠 New Insights into Respiratory Viral Infections 🦠
royalsocietypublishing.org/doi/10.1098/...
#Science #Biotechnology #Research #Microbiome #OrganOnChip #LungHealth
royalsocietypublishing.org/doi/10.1098/...
#Science #Biotechnology #Research #Microbiome #OrganOnChip #LungHealth
🚀 We are now on Bluesky!
We are the Applied Systems Biology research group, specializing in mathematical modeling and computer simulation of infection processes. 📊🦠
🌍 Website: asb.hki-jena.de
💻 GitHub: github.com/applied-syst...
#ImageAnalysis #BlueskyScience #BioimageAnalysisTools
We are the Applied Systems Biology research group, specializing in mathematical modeling and computer simulation of infection processes. 📊🦠
🌍 Website: asb.hki-jena.de
💻 GitHub: github.com/applied-syst...
#ImageAnalysis #BlueskyScience #BioimageAnalysisTools
Applied Systems Biology – HKI JenaContinueContinueContinue
asb.hki-jena.de
March 5, 2025 at 3:36 PM
🚀 We are now on Bluesky!
We are the Applied Systems Biology research group, specializing in mathematical modeling and computer simulation of infection processes. 📊🦠
🌍 Website: asb.hki-jena.de
💻 GitHub: github.com/applied-syst...
#ImageAnalysis #BlueskyScience #BioimageAnalysisTools
We are the Applied Systems Biology research group, specializing in mathematical modeling and computer simulation of infection processes. 📊🦠
🌍 Website: asb.hki-jena.de
💻 GitHub: github.com/applied-syst...
#ImageAnalysis #BlueskyScience #BioimageAnalysisTools