Alex Hübner
@alexhbnr.bsky.social
computational biologist working on reconstructing the past microbial diversity from ancient DNA samples; postdoc in the lab of Tina Warinner at MPI EVA, Leipzig.
I second this. In our lab, the majority of the pipelines are written in Nextflow as part of the nf-core initiative and they are easily deployable. However, I don't use Groovy to write a simple workflow to test something quickly, but do it in Python. So Snakemake is sort of a prototyping tool for me.
January 22, 2025 at 10:26 PM
I second this. In our lab, the majority of the pipelines are written in Nextflow as part of the nf-core initiative and they are easily deployable. However, I don't use Groovy to write a simple workflow to test something quickly, but do it in Python. So Snakemake is sort of a prototyping tool for me.