Albert Escobedo
@albertescobedo.bsky.social
Postdoc @ the CRG Genetic Systems lab | Protein biophysics - Deep Mutational Scanning - NMR - Molecular Dynamics
🙏 Huge thanks to my amazing co-authors Gesa Voigt & @ajfaure.bsky.social for their key contributions, and to @benlehner.bsky.social for his great guidance!
📝 Grateful to the reviewers for their thoughtful feedback, and everyone @science.org for helping bring this work to light.
📝 Grateful to the reviewers for their thoughtful feedback, and everyone @science.org for helping bring this work to light.
July 25, 2025 at 6:27 AM
🙏 Huge thanks to my amazing co-authors Gesa Voigt & @ajfaure.bsky.social for their key contributions, and to @benlehner.bsky.social for his great guidance!
📝 Grateful to the reviewers for their thoughtful feedback, and everyone @science.org for helping bring this work to light.
📝 Grateful to the reviewers for their thoughtful feedback, and everyone @science.org for helping bring this work to light.
🔬 Our findings suggest models of protein evolution must account for energy couplings and allosteric constraints.
🚀 These insights could accelerate protein engineering—for example, guiding resurfacing to reduce immunogenicity via smarter directed evolution.
🚀 These insights could accelerate protein engineering—for example, guiding resurfacing to reduce immunogenicity via smarter directed evolution.
July 25, 2025 at 6:27 AM
🔬 Our findings suggest models of protein evolution must account for energy couplings and allosteric constraints.
🚀 These insights could accelerate protein engineering—for example, guiding resurfacing to reduce immunogenicity via smarter directed evolution.
🚀 These insights could accelerate protein engineering—for example, guiding resurfacing to reduce immunogenicity via smarter directed evolution.
🧪 But stability isn’t the whole story—what about function?
🎯 Not all stable core variants could bind the FYN ligand.
🧿 Our findings suggest allostery is to blame: core mutations can subtly impact function—and become catastrophic when they pile up.
🎯 Not all stable core variants could bind the FYN ligand.
🧿 Our findings suggest allostery is to blame: core mutations can subtly impact function—and become catastrophic when they pile up.
July 25, 2025 at 6:27 AM
🧪 But stability isn’t the whole story—what about function?
🎯 Not all stable core variants could bind the FYN ligand.
🧿 Our findings suggest allostery is to blame: core mutations can subtly impact function—and become catastrophic when they pile up.
🎯 Not all stable core variants could bind the FYN ligand.
🧿 Our findings suggest allostery is to blame: core mutations can subtly impact function—and become catastrophic when they pile up.
🧩 Many amino acid combinations from homologs cores worked when “transplanted” into FYN-SH3—but some didn’t.
🛠️ For the toughest cases, suppressor mutations outside the core rescued stability—thanks to energetic couplings across the protein.
🛠️ For the toughest cases, suppressor mutations outside the core rescued stability—thanks to energetic couplings across the protein.
July 25, 2025 at 6:27 AM
🧩 Many amino acid combinations from homologs cores worked when “transplanted” into FYN-SH3—but some didn’t.
🛠️ For the toughest cases, suppressor mutations outside the core rescued stability—thanks to energetic couplings across the protein.
🛠️ For the toughest cases, suppressor mutations outside the core rescued stability—thanks to energetic couplings across the protein.
🤖 We fed our large combinatorial mutagenesis datasets into an AI that trains fully interpretable energy models to predict protein variant stability.
🧮 These models accurately distinguished sequence combinations found in nature—from homologs that diverged billions of years ago.
🧮 These models accurately distinguished sequence combinations found in nature—from homologs that diverged billions of years ago.
July 25, 2025 at 6:27 AM
🤖 We fed our large combinatorial mutagenesis datasets into an AI that trains fully interpretable energy models to predict protein variant stability.
🧮 These models accurately distinguished sequence combinations found in nature—from homologs that diverged billions of years ago.
🧮 These models accurately distinguished sequence combinations found in nature—from homologs that diverged billions of years ago.
🎲 We randomized the core and surface of the human FYN kinase SH3 domain using reduced amino acid alphabets.
🎰 Thousands of amino acid combinations retained the domain’s stability.
🧱 Even load-bearing amino acids at the core were highly malleable.
🎰 Thousands of amino acid combinations retained the domain’s stability.
🧱 Even load-bearing amino acids at the core were highly malleable.
July 25, 2025 at 6:27 AM
🎲 We randomized the core and surface of the human FYN kinase SH3 domain using reduced amino acid alphabets.
🎰 Thousands of amino acid combinations retained the domain’s stability.
🧱 Even load-bearing amino acids at the core were highly malleable.
🎰 Thousands of amino acid combinations retained the domain’s stability.
🧱 Even load-bearing amino acids at the core were highly malleable.
🌌 A small protein has as many possible sequences as atoms are in the Universe: 10^78.
🔭 How can we explore and model such a vast universe of possibilities?
🦎 Does that help understanding how evolution found so many stable, functional sequences?
🔭 How can we explore and model such a vast universe of possibilities?
🦎 Does that help understanding how evolution found so many stable, functional sequences?
July 25, 2025 at 6:27 AM
🌌 A small protein has as many possible sequences as atoms are in the Universe: 10^78.
🔭 How can we explore and model such a vast universe of possibilities?
🦎 Does that help understanding how evolution found so many stable, functional sequences?
🔭 How can we explore and model such a vast universe of possibilities?
🦎 Does that help understanding how evolution found so many stable, functional sequences?
🔗 You can read the paper here: www.science.org/doi/10.1126/...
Genetics, energetics, and allostery in proteins with randomized cores and surfaces
A lack of systematic experimental data limits our understanding of protein evolution. In this study, we experimentally characterized proteins with randomized sequences. Vast numbers of amino acid comb...
www.science.org
July 25, 2025 at 6:27 AM
🔗 You can read the paper here: www.science.org/doi/10.1126/...