Argyris Zardilis
@zardilis.bsky.social
Scientist @slcuplants.bsky.social
I like to wonder (το θαυμάζειν) about the world
https://www.slcu.cam.ac.uk/people/argyris-zardilis
I like to wonder (το θαυμάζειν) about the world
https://www.slcu.cam.ac.uk/people/argyris-zardilis
Reposted by Argyris Zardilis
Our work on training biophysical models with Jaxley is now out in @natmethods.nature.com. Led by @deismic.bsky.social, with @philipp.hertie.ai, @ppjgoncalves.bsky.social & @jakhmack.bsky.social et al.
Paper: www.nature.com/articles/s41...
Paper: www.nature.com/articles/s41...
Jaxley: differentiable simulation enables large-scale training of detailed biophysical models of neural dynamics - Nature Methods
Jaxley is a versatile platform for biophysical modeling in neuroscience. It allows efficiently simulating large-scale biophysical models on CPUs, GPUs and TPUs. Model parameters can be optimized with ...
www.nature.com
November 13, 2025 at 1:08 PM
Our work on training biophysical models with Jaxley is now out in @natmethods.nature.com. Led by @deismic.bsky.social, with @philipp.hertie.ai, @ppjgoncalves.bsky.social & @jakhmack.bsky.social et al.
Paper: www.nature.com/articles/s41...
Paper: www.nature.com/articles/s41...
Reposted by Argyris Zardilis
Plz RP. Come join us at @slcuplants.bsky.social @cam.ac.uk to study effector-targeted plant processes impacting plant cell biology and development.
www.cam.ac.uk/jobs/post-do...
www.schornacklab.net
www.cam.ac.uk/jobs/post-do...
www.schornacklab.net
November 6, 2025 at 6:51 PM
Plz RP. Come join us at @slcuplants.bsky.social @cam.ac.uk to study effector-targeted plant processes impacting plant cell biology and development.
www.cam.ac.uk/jobs/post-do...
www.schornacklab.net
www.cam.ac.uk/jobs/post-do...
www.schornacklab.net
Reposted by Argyris Zardilis
How can we organize current theoretical approaches for developmental biology - from information to dynamical systems & GRNs - into a common framework?
We propose to think along Marr's 3 levels: computational problem, algorithm, implementation
Check out our review:
arxiv.org/abs/2510.24536
We propose to think along Marr's 3 levels: computational problem, algorithm, implementation
Check out our review:
arxiv.org/abs/2510.24536
November 10, 2025 at 6:46 AM
How can we organize current theoretical approaches for developmental biology - from information to dynamical systems & GRNs - into a common framework?
We propose to think along Marr's 3 levels: computational problem, algorithm, implementation
Check out our review:
arxiv.org/abs/2510.24536
We propose to think along Marr's 3 levels: computational problem, algorithm, implementation
Check out our review:
arxiv.org/abs/2510.24536
Reposted by Argyris Zardilis
The Cambridge Morphogenesis Seminar Series is back this Michaelmas Term 2025!
Join us for an exciting lineup of talks exploring the many facets of tissue morphogenesis. Check out the flyer for the full list of speakers!
Join us for an exciting lineup of talks exploring the many facets of tissue morphogenesis. Check out the flyer for the full list of speakers!
October 3, 2025 at 8:02 AM
The Cambridge Morphogenesis Seminar Series is back this Michaelmas Term 2025!
Join us for an exciting lineup of talks exploring the many facets of tissue morphogenesis. Check out the flyer for the full list of speakers!
Join us for an exciting lineup of talks exploring the many facets of tissue morphogenesis. Check out the flyer for the full list of speakers!
Reposted by Argyris Zardilis
The program for the #CBIAS2025 is now live – space is limited, so register now to secure your spot! 24th-25th Nov, Wellcome Trust, London (UK) - see you there!
🔗⬇️
www.crick.ac.uk/whats-on/cri...
🔗⬇️
www.crick.ac.uk/whats-on/cri...
September 23, 2025 at 1:13 PM
The program for the #CBIAS2025 is now live – space is limited, so register now to secure your spot! 24th-25th Nov, Wellcome Trust, London (UK) - see you there!
🔗⬇️
www.crick.ac.uk/whats-on/cri...
🔗⬇️
www.crick.ac.uk/whats-on/cri...
Reposted by Argyris Zardilis
New preprint!
"Understanding Shape and Residual Stress Dynamics in Rod-Like Plant Organs" 🌱
with @merozlab.bsky.social and @routierlab.bsky.social
👉 doi.org/10.1101/2025...
"Understanding Shape and Residual Stress Dynamics in Rod-Like Plant Organs" 🌱
with @merozlab.bsky.social and @routierlab.bsky.social
👉 doi.org/10.1101/2025...
Understanding Shape and Residual Stress Dynamics in Rod-Like Plant Organs https://www.biorxiv.org/content/10.1101/2025.08.25.672092v1
August 29, 2025 at 7:51 AM
New preprint!
"Understanding Shape and Residual Stress Dynamics in Rod-Like Plant Organs" 🌱
with @merozlab.bsky.social and @routierlab.bsky.social
👉 doi.org/10.1101/2025...
"Understanding Shape and Residual Stress Dynamics in Rod-Like Plant Organs" 🌱
with @merozlab.bsky.social and @routierlab.bsky.social
👉 doi.org/10.1101/2025...
Reposted by Argyris Zardilis
The BM^2 Lab is hiring a Ph.D. student to work on a variety of problems connected to modeling of morphogenesis in plants (i.e. ovule curvature formation, fixed handedness establishment in certain plant organs and its link to cell wall mechanics).
Please share!
Please share!
September 7, 2025 at 8:44 AM
The BM^2 Lab is hiring a Ph.D. student to work on a variety of problems connected to modeling of morphogenesis in plants (i.e. ovule curvature formation, fixed handedness establishment in certain plant organs and its link to cell wall mechanics).
Please share!
Please share!
Reposted by Argyris Zardilis
🌿💻 Plant Models and Morphology 💻🌿
The 9th International Plant Computational Biology Workshop @slcuplants.bsky.social brought together mathematicians, computer scientists, physicists and biologists exploring plant development through models and simulations.
Huge thanks to organisers and speakers!👏
The 9th International Plant Computational Biology Workshop @slcuplants.bsky.social brought together mathematicians, computer scientists, physicists and biologists exploring plant development through models and simulations.
Huge thanks to organisers and speakers!👏
September 17, 2025 at 12:03 PM
🌿💻 Plant Models and Morphology 💻🌿
The 9th International Plant Computational Biology Workshop @slcuplants.bsky.social brought together mathematicians, computer scientists, physicists and biologists exploring plant development through models and simulations.
Huge thanks to organisers and speakers!👏
The 9th International Plant Computational Biology Workshop @slcuplants.bsky.social brought together mathematicians, computer scientists, physicists and biologists exploring plant development through models and simulations.
Huge thanks to organisers and speakers!👏
Reposted by Argyris Zardilis
Very happy to share MODIS - a new Multi-Omics Data Integration method for Small and unpaired datasets!
We solve a long-standing problem in the field: how to perform data integration for small unpaired datasets
Our solution: learning with class imbalance on both reference and target datasets!
We solve a long-standing problem in the field: how to perform data integration for small unpaired datasets
Our solution: learning with class imbalance on both reference and target datasets!
September 16, 2025 at 10:35 AM
Very happy to share MODIS - a new Multi-Omics Data Integration method for Small and unpaired datasets!
We solve a long-standing problem in the field: how to perform data integration for small unpaired datasets
Our solution: learning with class imbalance on both reference and target datasets!
We solve a long-standing problem in the field: how to perform data integration for small unpaired datasets
Our solution: learning with class imbalance on both reference and target datasets!
Amazing illustration @nickdesnoyer.bsky.social 🌺!
I wish we had something like this to illustrate the dynamics of our model!
Paper (including model, not animated sadly!)
➡️ doi.org/10.1126/scia...
I wish we had something like this to illustrate the dynamics of our model!
Paper (including model, not animated sadly!)
➡️ doi.org/10.1126/scia...
Friday Flower 004: Hibiscus trionum 🌺✨
Hibiscus trionum displays a dark bullseye in the center that acts as a landing pad for pollinators 🎯
The bullseye is made by a developmental boundary delineating distinct cell shapes and pigments.
Hibiscus trionum displays a dark bullseye in the center that acts as a landing pad for pollinators 🎯
The bullseye is made by a developmental boundary delineating distinct cell shapes and pigments.
September 16, 2025 at 4:03 PM
Amazing illustration @nickdesnoyer.bsky.social 🌺!
I wish we had something like this to illustrate the dynamics of our model!
Paper (including model, not animated sadly!)
➡️ doi.org/10.1126/scia...
I wish we had something like this to illustrate the dynamics of our model!
Paper (including model, not animated sadly!)
➡️ doi.org/10.1126/scia...
Come and work with us!
We are hiring a research assistant/associate @slcuplants.bsky.social to work on the RESYDE project (www2.hu-berlin.de/resyde/)
using ML for multi-scale data and modelling to understand and engineer flower development!
Details: www.jobs.cam.ac.uk/job/52116/
We are hiring a research assistant/associate @slcuplants.bsky.social to work on the RESYDE project (www2.hu-berlin.de/resyde/)
using ML for multi-scale data and modelling to understand and engineer flower development!
Details: www.jobs.cam.ac.uk/job/52116/
Home -
RESYDE: Re-engineering symmetry breaking in development and evolution. A consortia of plant scientists from Europe and Australia has been awarded a prestigious research grant from the ERC, which will ...
www2.hu-berlin.de
July 23, 2025 at 12:16 PM
Come and work with us!
We are hiring a research assistant/associate @slcuplants.bsky.social to work on the RESYDE project (www2.hu-berlin.de/resyde/)
using ML for multi-scale data and modelling to understand and engineer flower development!
Details: www.jobs.cam.ac.uk/job/52116/
We are hiring a research assistant/associate @slcuplants.bsky.social to work on the RESYDE project (www2.hu-berlin.de/resyde/)
using ML for multi-scale data and modelling to understand and engineer flower development!
Details: www.jobs.cam.ac.uk/job/52116/
It was very nice to attend and present at #LMRL @iclr-conf.bsky.social !
Our paper with my student Sasha Budnikova @slcuplants.bsky.social on learning mechanical models (Lockhart) from data!
openreview.net/forum?id=yQF...
Our paper with my student Sasha Budnikova @slcuplants.bsky.social on learning mechanical models (Lockhart) from data!
openreview.net/forum?id=yQF...
May 2, 2025 at 7:05 AM
It was very nice to attend and present at #LMRL @iclr-conf.bsky.social !
Our paper with my student Sasha Budnikova @slcuplants.bsky.social on learning mechanical models (Lockhart) from data!
openreview.net/forum?id=yQF...
Our paper with my student Sasha Budnikova @slcuplants.bsky.social on learning mechanical models (Lockhart) from data!
openreview.net/forum?id=yQF...
Looking forward to this! Join us!
Join us in Cambridge this September for the 9th annual Plant #ComputationalBiology Workshop.
Seminars and discussions will focus on 5 key themes:
1. #Mechanics
2. Pattern processes
3. #AI
4. Computer graphics
5. Concepts
🧳3 travel grants available
REGISTER TODAY www.slcu.cam.ac.uk/computationa...
Seminars and discussions will focus on 5 key themes:
1. #Mechanics
2. Pattern processes
3. #AI
4. Computer graphics
5. Concepts
🧳3 travel grants available
REGISTER TODAY www.slcu.cam.ac.uk/computationa...
April 10, 2025 at 11:01 AM
Looking forward to this! Join us!
Reposted by Argyris Zardilis
🚨 Paper Alert 🚨
Absolutely delighted to share our last paper on "spatial mechano-transcriptomics" @naturemethods👇!!
www.nature.com/articles/s41...
Absolutely delighted to share our last paper on "spatial mechano-transcriptomics" @naturemethods👇!!
www.nature.com/articles/s41...
A computational pipeline for spatial mechano-transcriptomics - Nature Methods
The authors present a computational framework that leverages mechanical force inference and spatial transcriptomics to enable analyses of the interplay between the transcriptomic and mechanical state.
www.nature.com
March 17, 2025 at 12:53 PM
🚨 Paper Alert 🚨
Absolutely delighted to share our last paper on "spatial mechano-transcriptomics" @naturemethods👇!!
www.nature.com/articles/s41...
Absolutely delighted to share our last paper on "spatial mechano-transcriptomics" @naturemethods👇!!
www.nature.com/articles/s41...
Reposted by Argyris Zardilis
We were delighted to host @zardilis.bsky.social from Cambridge's Sainsbury Laboratory during the past two weeks! It was a fantastic opportunity to exchange ideas on the spatial biology of plants and beyond. Interesting new methods combining expression patterns, morphometric and physical features!!
November 25, 2024 at 10:28 AM
We were delighted to host @zardilis.bsky.social from Cambridge's Sainsbury Laboratory during the past two weeks! It was a fantastic opportunity to exchange ideas on the spatial biology of plants and beyond. Interesting new methods combining expression patterns, morphometric and physical features!!