thijsstuyver.bsky.social
@thijsstuyver.bsky.social
Reposted
Predictive chemistry often struggles with scarce data. Surrogate models can help, but should we use their predicted QM descriptors or hidden embeddings? Chen & Stuyver show that hidden spaces usually win—faster, more robust, and data-efficient. pubs.rsc.org/en/content/a...
Harnessing surrogate models for data-efficient predictive chemistry: descriptors vs. learned hidden representations
Predictive chemistry often faces data scarcity, limiting the performance of machine learning (ML) models. This is particularly the case for specialized tasks such as reaction rate or selectivity predi...
pubs.rsc.org
September 29, 2025 at 2:08 PM
New paper from our group out in JCTC! We introduce CYCLO70 — a benchmarking set of 70 challenging cycloaddition reactions (Diels–Alder, dipolar, sigmatropic).
👉 doi.org/10.1021/acs.... (1/6)
CYCLO70: A New Challenging Pericyclic Benchmarking Set for Kinetics and Thermochemistry Evaluation
Here, a new challenging benchmarking data set for cycloaddition reactions, CYCLO70, is presented and analyzed. CYCLO70 has been generated with the specific aim of being representative of the most chal...
doi.org
September 12, 2025 at 5:20 PM
Harnessing Surrogate Models for Data-efficient Predictive Chemistry: Descriptors vs. Learned Hidden Representations | ChemRxiv - doi.org/10.26434/che...
June 13, 2025 at 12:32 PM
New preprint -- CYCLO70: A New Challenging Pericyclic Benchmarking Set for Kinetics and Thermochemistry Evaluation t.co/O6309jKaJq (1/5)
June 11, 2025 at 10:52 AM
New preprint from our group: Screening Diels-Alder reaction space to identify candidate reactions for self-healing polymer applications (1/5)

chemrxiv.org/engage/chemr...
May 19, 2025 at 12:14 PM
Reposted
What can be learned from the electrostatic environments within nitrogenase enzymes?

Authors: Thijs Stuyver, Olena Protsenko, Davide Avagliano, Thomas Ward
DOI: 10.26434/chemrxiv-2025-dndx6
February 12, 2025 at 12:49 PM
Happy to see this nice collaboration with @moranlabchem.bsky.social out in @ChemistryEur -- Abiotic Ribonucleoside Formation in Aqueous Microdroplets: Mechanistic Exploration, Acidity, and Electric Field Effects. @javialra97.bsky.social chemistry-europe.onlinelibrary.wiley.com/doi/full/10....
Abiotic Ribonucleoside Formation in Aqueous Microdroplets: Mechanistic Exploration, Acidity, and Electric Field Effects
A computational investigation of the reported abiotic phosphorylation of ribose and the subsequent formation of ribonucleosides reveals that the most plausible reaction mechanism involves the protona...
chemistry-europe.onlinelibrary.wiley.com
February 10, 2025 at 5:44 PM
Now out in JCTC: Improving the Reliability of, and Confidence in, DFT Functional Benchmarking through Active Learning @javialra97.bsky.social pubs.acs.org/doi/full/10....
Improving the Reliability of, and Confidence in, DFT Functional Benchmarking through Active Learning
Validating the performance of exchange-correlation functionals is vital to ensure the reliability of density functional theory (DFT) calculations. Typically, these validations involve benchmarking dat...
pubs.acs.org
February 10, 2025 at 5:26 PM
One more week to apply!
We’re reopening applications! A 5-year position as Data Steward/Research Engineer for the chemistry departments of
@psl-univ.bsky.social is available.

💼 New deadline: February 7th.
📄 More info & application details below.
🔁 Reposts appreciated! 🙌
January 31, 2025 at 9:32 AM
We’re reopening applications! A 5-year position as Data Steward/Research Engineer for the chemistry departments of
@psl-univ.bsky.social is available.

💼 New deadline: February 7th.
📄 More info & application details below.
🔁 Reposts appreciated! 🙌
January 8, 2025 at 12:50 PM
Reposted
What better first post than to share our last two preprints! 🚀

In one, we study how electric fields modulate chemical reactivity, and in the second, we explore a data-efficient strategy for the assembly of more representative benchmarking datasets for DFT validation.

@thijsstuyver.bsky.social
December 13, 2024 at 8:43 AM
Reposted
Abiotic ribonucleoside formation in aqueous microdroplets: mechanistic exploration, acidity, and electric field effects

Authors: Maciej Piejko, Javier Emilio Alfonso Ramos, Joseph Moran, Thijs Stuyver
DOI: 10.26434/chemrxiv-2024-m39s3
December 5, 2024 at 4:45 AM
Reposted
Improving the reliability of, and confidence in, DFT functional benchmarking through active learning

Authors: Javier E. Alfonso-Ramos, Carlo Adamo, Éric Brémond, Thijs Stuyver
DOI: 10.26434/chemrxiv-2024-98nc1
December 12, 2024 at 12:40 PM