Thea Os Andersen
@theaosandersen.bsky.social
🌱🔬 Postdoc at BioRef and the MEMO group NMBU | Navigating the world of microbes for a sustainable future 🌍💡Microbial ecology, biogas production and meta-omics. She/her
Dreaming of a one-stop-shop for analysing microbial genomes using all your favorite tools? Look no further, CompareM2 is out 🤩
Yay new version of CompareM2 (v2.8.2)
github.com/cmkobel/Comp...
- New "passthrough argument" feature to address any command line argument to any rule in the workflow.
#microbiology #bioinformatics #opensource #science #genomics
github.com/cmkobel/Comp...
- New "passthrough argument" feature to address any command line argument to any rule in the workflow.
#microbiology #bioinformatics #opensource #science #genomics
Release v2.8.2 · cmkobel/CompareM2
What's Changed
Update README.md by @wwood in #102
New Contributors
@wwood made their first contribution in #102
Full Changelog: v2.8.1...v2.8.2
2.8.2
Add --cite parameter to executable.
New mo...
github.com
July 17, 2024 at 11:57 AM
Dreaming of a one-stop-shop for analysing microbial genomes using all your favorite tools? Look no further, CompareM2 is out 🤩
Reposted by Thea Os Andersen
Holo-omics review is out!
There are no animals - Only holobionts.
link: doi.org/10.1039/D4MO...
@oveoyas.bsky.social @microbesrule.bsky.social @jennymerkesvik.bsky.social @velma-te-a.bsky.social
#symbiosis #microbiology #holoomics #bioinformatics #science #openaccess
There are no animals - Only holobionts.
link: doi.org/10.1039/D4MO...
@oveoyas.bsky.social @microbesrule.bsky.social @jennymerkesvik.bsky.social @velma-te-a.bsky.social
#symbiosis #microbiology #holoomics #bioinformatics #science #openaccess
July 11, 2024 at 2:12 PM
Holo-omics review is out!
There are no animals - Only holobionts.
link: doi.org/10.1039/D4MO...
@oveoyas.bsky.social @microbesrule.bsky.social @jennymerkesvik.bsky.social @velma-te-a.bsky.social
#symbiosis #microbiology #holoomics #bioinformatics #science #openaccess
There are no animals - Only holobionts.
link: doi.org/10.1039/D4MO...
@oveoyas.bsky.social @microbesrule.bsky.social @jennymerkesvik.bsky.social @velma-te-a.bsky.social
#symbiosis #microbiology #holoomics #bioinformatics #science #openaccess
Reposted by Thea Os Andersen
Excited that my first machine learning preprint is out! 🤖
We trained a simple neural network to predict genome-scale metabolic models from 16S rRNA gene sequences 🧬
This worked surprisingly well, and we were able to classify accurate models for both archaea and bacteria 🦠
We trained a simple neural network to predict genome-scale metabolic models from 16S rRNA gene sequences 🧬
This worked surprisingly well, and we were able to classify accurate models for both archaea and bacteria 🦠
Predicting microbial genome-scale metabolic networks directly from 16S rRNA gene sequences https://www.biorxiv.org/content/10.1101/2024.01.26.576649v1
Predicting microbial genome-scale metabolic networks directly from 16S rRNA gene sequences https://www.biorxiv.org/content/10.1101/2024.01.26.576649v1
Genome-scale metabolic models are key biotechnology tools that can predict metabolic capabilities an
www.biorxiv.org
January 28, 2024 at 5:43 AM
Excited that my first machine learning preprint is out! 🤖
We trained a simple neural network to predict genome-scale metabolic models from 16S rRNA gene sequences 🧬
This worked surprisingly well, and we were able to classify accurate models for both archaea and bacteria 🦠
We trained a simple neural network to predict genome-scale metabolic models from 16S rRNA gene sequences 🧬
This worked surprisingly well, and we were able to classify accurate models for both archaea and bacteria 🦠