SugimuraLab
sugimuralab.bsky.social
SugimuraLab
@sugimuralab.bsky.social
Sugimura lab at the Department of Bioinformatics and Systems Biology, Faculty of Science, The University of Tokyo.
Pinned
Xin received the Excellent Research Award based on her master’s thesis. Congratulations!
M2の厳欣さんが東京大学大学院新領域創成科学研究科メディカル情報生命専攻のExcellent Research Award優秀賞を受賞しました。
cbms.k.u-tokyo.ac.jp/about/award/
To actin and adhesion lovers in the Fly community, we’re pleased to announce that a GFP knock-in line for Coronin-1, a WD-repeat actin-binding protein, is now available from the Kyoto Stock Center.
Stock: kyotofly.kit.jp/cgi-bin/stoc...
Original publication: www.jstage.jst.go.jp/article/csf/...
November 12, 2025 at 6:49 AM
Thank you for visiting us and for the excellent seminar! We really enjoyed the stimulating discussions. @turlierlab.bsky.social
Great time with @sugimuralab.bsky.social, Shuji Ishihara and colleagues at Tokyo University 🇯🇵. Thank you for your very kind welcome and great scientific discussions 🙂
May 22, 2025 at 7:04 AM
New preprint! Using in vivo data of epithelial development, we demonstrate the compatibility of strain rate tensors and the accuracy of kinematic equations. The results cross-validate the modified texture analysis and our hydrodynamic model.
www.biorxiv.org/content/10.1...
In vivo assessment of kinematic relationships for epithelial morphogenesis
Tissue growth and deformation result from the combined effects of various cellular events, including cell shape change, cell rearrangement, cell division, and cell death. Resolving and integrating the...
www.biorxiv.org
April 24, 2025 at 9:30 AM
Xin received the Excellent Research Award based on her master’s thesis. Congratulations!
M2の厳欣さんが東京大学大学院新領域創成科学研究科メディカル情報生命専攻のExcellent Research Award優秀賞を受賞しました。
cbms.k.u-tokyo.ac.jp/about/award/
March 24, 2025 at 11:03 AM
Bayesian Force Inference is now on GitHub!
Together with GetVertex, an ImageJ/Fiji plugin for extracting input data from skeletonized images, this enables code-free quantification of forces during epithelial development.
github.com/Sugimuralab/...
GitHub - Sugimuralab/BayesianForceInference_GoogleColab
Contribute to Sugimuralab/BayesianForceInference_GoogleColab development by creating an account on GitHub.
github.com
February 27, 2025 at 8:42 AM
Happy to share GetVertex, an ImageJ/Fiji plugin that extracts cell vertex positions and connectivity from skeletonized images.
The output text file can be used as input for Bayesian Force Inference and Image-based Parameter Inference for Epithelial Mechanics.
github.com/Sugimuralab/...
GitHub - Sugimuralab/GetVertexPlugin
Contribute to Sugimuralab/GetVertexPlugin development by creating an account on GitHub.
github.com
February 27, 2025 at 8:31 AM