Chris Schmidt
@schmchris.bsky.social
Scientific Project Manager at the German Cancer Research Center (DKFZ) in Heidelberg, project coordination for NFDI4BIOIMAGE and I3D:bio, biologist by training (immunology, biochemistry, cell biology)
Reposted by Chris Schmidt
Poster Session at #CoRDI2025. Here is @joshmoore.bsky.social presenting how cloud-ready next-generation file formats like #OME-Zarr enable federated repositories with large N-dimensional arrays at peta-scale.
#OME-NGFF @nfdi4bioimage.bsky.social
Find the poster on C.A.R.L level 2 @rwth.bsky.social
#OME-NGFF @nfdi4bioimage.bsky.social
Find the poster on C.A.R.L level 2 @rwth.bsky.social
August 27, 2025 at 7:41 AM
Poster Session at #CoRDI2025. Here is @joshmoore.bsky.social presenting how cloud-ready next-generation file formats like #OME-Zarr enable federated repositories with large N-dimensional arrays at peta-scale.
#OME-NGFF @nfdi4bioimage.bsky.social
Find the poster on C.A.R.L level 2 @rwth.bsky.social
#OME-NGFF @nfdi4bioimage.bsky.social
Find the poster on C.A.R.L level 2 @rwth.bsky.social
Large, complex data require the right environments to handle and process. Dirk v. Suchodoletz and his team create an open source virtual desktop infrastructure fit for bioimage data and more. @nfdi4bioimage.bsky.social @nfdi4plants.bsky.social #CoRDI2025
August 27, 2025 at 9:06 AM
Large, complex data require the right environments to handle and process. Dirk v. Suchodoletz and his team create an open source virtual desktop infrastructure fit for bioimage data and more. @nfdi4bioimage.bsky.social @nfdi4plants.bsky.social #CoRDI2025
An enlightening opening keynote by Rob Finn from @ebi.embl.org at #CoRDI2025 in Aachen. Among others, he highlighted the rapid growth of data in the field of imaging as well as challenges of data handling and sharing across scales and technologies.
Looking forward to an exciting conference ahead.
Looking forward to an exciting conference ahead.
August 26, 2025 at 10:31 AM
An enlightening opening keynote by Rob Finn from @ebi.embl.org at #CoRDI2025 in Aachen. Among others, he highlighted the rapid growth of data in the field of imaging as well as challenges of data handling and sharing across scales and technologies.
Looking forward to an exciting conference ahead.
Looking forward to an exciting conference ahead.
Join Riccardo Massei, Michele Bortolomeazzi, & me -representing @nfdi4bioimage.bsky.social & #I3Dbio - for an introduction to the new Helmholtz #OMERO instance hosted in HIFIS by DigIT Infrastructure & Scientific Computing at @www.helmholtz-munich.de
🙏to @helmholtzimaging.bsky.social for organizing!
🙏to @helmholtzimaging.bsky.social for organizing!
New #opensource cloud-based imaging resource: #OMERO for @helmholtz.de is now live🎉
Store, visualize & analyze complex scientific image data 👉 omero.helmholtz-munich.de
Join the July 17 workshop (25 spots) 👉 events.hifis.net/event/2734/
#HIconference2025 #imaging #HIFIS @www.helmholtz-munich.de
Store, visualize & analyze complex scientific image data 👉 omero.helmholtz-munich.de
Join the July 17 workshop (25 spots) 👉 events.hifis.net/event/2734/
#HIconference2025 #imaging #HIFIS @www.helmholtz-munich.de
June 27, 2025 at 8:47 AM
Join Riccardo Massei, Michele Bortolomeazzi, & me -representing @nfdi4bioimage.bsky.social & #I3Dbio - for an introduction to the new Helmholtz #OMERO instance hosted in HIFIS by DigIT Infrastructure & Scientific Computing at @www.helmholtz-munich.de
🙏to @helmholtzimaging.bsky.social for organizing!
🙏to @helmholtzimaging.bsky.social for organizing!
Reposted by Chris Schmidt
In this SciArt profile, we find out more about Henning Falk @falk-illustrations.de, who did a PhD in developmental biology, and now enjoys creating science-related cartoons as a freelancer. Check out his recent illustrations about biological data management:
thenode.biologists.com/sciart-profi...
thenode.biologists.com/sciart-profi...
June 17, 2025 at 2:28 PM
In this SciArt profile, we find out more about Henning Falk @falk-illustrations.de, who did a PhD in developmental biology, and now enjoys creating science-related cartoons as a freelancer. Check out his recent illustrations about biological data management:
thenode.biologists.com/sciart-profi...
thenode.biologists.com/sciart-profi...
Reposted by Chris Schmidt
📨 Find out what's new, what's upcoming and what's to read or review in our recent @nfdi4bioimage.bsky.social newsletter.
We have compiled our latest conference contributions, publications and important upcoming events in the field of #BioImaging and #RDM for you.
👉 nfdi4bioimage.de/community-in...
We have compiled our latest conference contributions, publications and important upcoming events in the field of #BioImaging and #RDM for you.
👉 nfdi4bioimage.de/community-in...
June 17, 2025 at 1:31 PM
📨 Find out what's new, what's upcoming and what's to read or review in our recent @nfdi4bioimage.bsky.social newsletter.
We have compiled our latest conference contributions, publications and important upcoming events in the field of #BioImaging and #RDM for you.
👉 nfdi4bioimage.de/community-in...
We have compiled our latest conference contributions, publications and important upcoming events in the field of #BioImaging and #RDM for you.
👉 nfdi4bioimage.de/community-in...
Reposted by Chris Schmidt
🌟 #MeetOurDataStewards – Why does #DataManagement matter? #1: Ksenia Krooß 🎥
Ksenia Krooß shares: “It keeps research organized, helps your future self and others, and accelerates science.” Don’t treat it as an afterthought— reach out to your local #RDM office or #NFDI initiative for support.
Ksenia Krooß shares: “It keeps research organized, helps your future self and others, and accelerates science.” Don’t treat it as an afterthought— reach out to your local #RDM office or #NFDI initiative for support.
June 12, 2025 at 12:02 PM
🌟 #MeetOurDataStewards – Why does #DataManagement matter? #1: Ksenia Krooß 🎥
Ksenia Krooß shares: “It keeps research organized, helps your future self and others, and accelerates science.” Don’t treat it as an afterthought— reach out to your local #RDM office or #NFDI initiative for support.
Ksenia Krooß shares: “It keeps research organized, helps your future self and others, and accelerates science.” Don’t treat it as an afterthought— reach out to your local #RDM office or #NFDI initiative for support.
@joshmoore.bsky.social presenting at #ELMI2025 about the #Bioimaging community's immense efforts to pave the way to OME-Zarr 1.0 -
Stable cloud-readiness for bioimage data is getting real.
Slides available in Zenodo:
doi.org/10.5281/zeno...
@gerbi-gmb.de
@nfdi4bioimage.bsky.social
Stable cloud-readiness for bioimage data is getting real.
Slides available in Zenodo:
doi.org/10.5281/zeno...
@gerbi-gmb.de
@nfdi4bioimage.bsky.social
June 5, 2025 at 10:36 AM
@joshmoore.bsky.social presenting at #ELMI2025 about the #Bioimaging community's immense efforts to pave the way to OME-Zarr 1.0 -
Stable cloud-readiness for bioimage data is getting real.
Slides available in Zenodo:
doi.org/10.5281/zeno...
@gerbi-gmb.de
@nfdi4bioimage.bsky.social
Stable cloud-readiness for bioimage data is getting real.
Slides available in Zenodo:
doi.org/10.5281/zeno...
@gerbi-gmb.de
@nfdi4bioimage.bsky.social
What a special atmosphere! #ELMI2025 Poster Session 1 on Helix A last night. The perfect environment to exchange with friends & colleagues about #bioimaging #RDM:
- OMERO-vitessce
- IO-FAST initiative
- @nfdi4bioimage.bsky.social Data Stewardship
Talks, Workshops & Poster Session 2 up ahead today!🔬
- OMERO-vitessce
- IO-FAST initiative
- @nfdi4bioimage.bsky.social Data Stewardship
Talks, Workshops & Poster Session 2 up ahead today!🔬
June 5, 2025 at 8:01 AM
What a special atmosphere! #ELMI2025 Poster Session 1 on Helix A last night. The perfect environment to exchange with friends & colleagues about #bioimaging #RDM:
- OMERO-vitessce
- IO-FAST initiative
- @nfdi4bioimage.bsky.social Data Stewardship
Talks, Workshops & Poster Session 2 up ahead today!🔬
- OMERO-vitessce
- IO-FAST initiative
- @nfdi4bioimage.bsky.social Data Stewardship
Talks, Workshops & Poster Session 2 up ahead today!🔬
Reposted by Chris Schmidt
Who does microscopy and has never heard of Bio-Formats? You probably used it anyway
June 4, 2025 at 9:13 PM
Who does microscopy and has never heard of Bio-Formats? You probably used it anyway
Great stimulating discussions about #bioimage data organization in #OMERO led by @tom-bssnnt.bsky.social from #i3dbio at #ELMI2025
June 4, 2025 at 4:04 PM
Great stimulating discussions about #bioimage data organization in #OMERO led by @tom-bssnnt.bsky.social from #i3dbio at #ELMI2025
Reposted by Chris Schmidt
🥳 We've just signed the Memorandum of Understanding with @globalbioimaging.bsky.social at #ELMI2025! 🥳
With this step, GerBI proudly joins the international network to foster global exchange, training, and collaboration in bioimaging.
@sweidtkamp.bsky.social @janinahanne.bsky.social
With this step, GerBI proudly joins the international network to foster global exchange, training, and collaboration in bioimaging.
@sweidtkamp.bsky.social @janinahanne.bsky.social
June 3, 2025 at 11:49 AM
🥳 We've just signed the Memorandum of Understanding with @globalbioimaging.bsky.social at #ELMI2025! 🥳
With this step, GerBI proudly joins the international network to foster global exchange, training, and collaboration in bioimaging.
@sweidtkamp.bsky.social @janinahanne.bsky.social
With this step, GerBI proudly joins the international network to foster global exchange, training, and collaboration in bioimaging.
@sweidtkamp.bsky.social @janinahanne.bsky.social
Reposted by Chris Schmidt
On #ELMI2025 an ad-hoc Question&Answer session on OMERO went very well, lively discussion with lot of tips on finding the optimal path to successful OMERO adoption in an Institution.
June 4, 2025 at 10:15 AM
On #ELMI2025 an ad-hoc Question&Answer session on OMERO went very well, lively discussion with lot of tips on finding the optimal path to successful OMERO adoption in an Institution.
Reposted by Chris Schmidt
I think the @naturemethods.bsky.social editorial is particularly timely this month in support of basic research funding in the life sciences. www.nature.com/articles/s41...
The big picture in science - Nature Methods
Basic science and methods development is essential to ensure that lifesaving advances and improvements to the human condition continue moving forward. Such research needs strong and sustained funding ...
www.nature.com
April 15, 2025 at 11:22 PM
I think the @naturemethods.bsky.social editorial is particularly timely this month in support of basic research funding in the life sciences. www.nature.com/articles/s41...
Reposted by Chris Schmidt
🐿️ This week you could meet some of our colleagues at the FDM-Werkstatt in Münster. Various RDM tools were presented, tried out and discussed at the community workshop, including in a session with our @nfdi4bioimage.bsky.social colleague Jens Wendt. He explained how to embed OMERO.iviewer in eLabFTW.
April 4, 2025 at 9:54 AM
🐿️ This week you could meet some of our colleagues at the FDM-Werkstatt in Münster. Various RDM tools were presented, tried out and discussed at the community workshop, including in a session with our @nfdi4bioimage.bsky.social colleague Jens Wendt. He explained how to embed OMERO.iviewer in eLabFTW.
Reposted by Chris Schmidt
🌟 Thank you for an amazing #TiM2025! 🌟
Five days filled with inspiring talks, cutting-edge workshops on #microscopy, #RDM, #ImageAnalysis, and much more!
A huge thank you to all 220 participants for your enthusiasm & contributions!
Special thanks to @gerhardholst.bsky.social for the group picture!
Five days filled with inspiring talks, cutting-edge workshops on #microscopy, #RDM, #ImageAnalysis, and much more!
A huge thank you to all 220 participants for your enthusiasm & contributions!
Special thanks to @gerhardholst.bsky.social for the group picture!
March 25, 2025 at 11:48 AM
🌟 Thank you for an amazing #TiM2025! 🌟
Five days filled with inspiring talks, cutting-edge workshops on #microscopy, #RDM, #ImageAnalysis, and much more!
A huge thank you to all 220 participants for your enthusiasm & contributions!
Special thanks to @gerhardholst.bsky.social for the group picture!
Five days filled with inspiring talks, cutting-edge workshops on #microscopy, #RDM, #ImageAnalysis, and much more!
A huge thank you to all 220 participants for your enthusiasm & contributions!
Special thanks to @gerhardholst.bsky.social for the group picture!
Today, #TiM2025 came to a close after a splendid talk by Anna Kreshuk @ilastik-team.bsky.social, Task Area Leader in @nfdi4bioimage.bsky.social, about making machine learning for bioimage analysis not only better but also more accessible.
Thanks to @gerbi-gmb.de for this exciting & inspiring week!
Thanks to @gerbi-gmb.de for this exciting & inspiring week!
March 21, 2025 at 8:51 PM
Today, #TiM2025 came to a close after a splendid talk by Anna Kreshuk @ilastik-team.bsky.social, Task Area Leader in @nfdi4bioimage.bsky.social, about making machine learning for bioimage analysis not only better but also more accessible.
Thanks to @gerbi-gmb.de for this exciting & inspiring week!
Thanks to @gerbi-gmb.de for this exciting & inspiring week!
Reposted by Chris Schmidt
🔬Lasers in science, lasers on the dance floor! More fantastic moments from Day 4 of #TiM2025: Our #fluorescence party brought both, with a spectacular laser show and live saxophone beats from the amazing Moni Ramoni. 🎷🎶🔥
March 21, 2025 at 1:13 PM
🔬Lasers in science, lasers on the dance floor! More fantastic moments from Day 4 of #TiM2025: Our #fluorescence party brought both, with a spectacular laser show and live saxophone beats from the amazing Moni Ramoni. 🎷🎶🔥
Reposted by Chris Schmidt
Memorable moments from Day 4 of #TiM2025: Key note speaker @superresolusian.bsky.social provided us inspiring insights into accuracy and reliability in #Fluorescence and #SuperResolution #Microscopy image processing.🔬🎯
March 21, 2025 at 8:58 AM
Memorable moments from Day 4 of #TiM2025: Key note speaker @superresolusian.bsky.social provided us inspiring insights into accuracy and reliability in #Fluorescence and #SuperResolution #Microscopy image processing.🔬🎯
Learning big time from our colleagues Guillaume Gay and Julio Mateos-Langerak from @france-bioimaging.bsky.social about Data Management Tools and practices in the French Community at the #TiM2025. Thanks for a great and personalized Workshop! 👏
March 20, 2025 at 6:50 PM
Learning big time from our colleagues Guillaume Gay and Julio Mateos-Langerak from @france-bioimaging.bsky.social about Data Management Tools and practices in the French Community at the #TiM2025. Thanks for a great and personalized Workshop! 👏
Reposted by Chris Schmidt
Kudos to Matthew Hartley of the @bioimagearchive.bsky.social for his message of global collaboration in the #bioimaging community @ #TiM2025
👏👏👏
👏👏👏
March 18, 2025 at 1:37 PM
Kudos to Matthew Hartley of the @bioimagearchive.bsky.social for his message of global collaboration in the #bioimaging community @ #TiM2025
👏👏👏
👏👏👏
@anwaiarchit.bsky.social & @cppape.bsky.social demonstrating the power of micro-sam, the napari plugin for the microscopy segment anything model, in their awesome workshop at the #TiM2025 conference in Münsingen. 🔬🦠💻
March 19, 2025 at 9:08 AM
@anwaiarchit.bsky.social & @cppape.bsky.social demonstrating the power of micro-sam, the napari plugin for the microscopy segment anything model, in their awesome workshop at the #TiM2025 conference in Münsingen. 🔬🦠💻
Reposted by Chris Schmidt
Today we had two fantastic key note talks at #TiM2025. Matthew Hartley enlightened us about #DataSharing through @bioimagearchive.bsky.social
🔬➡️🧑🔬
Mayeul Collot invited us into the world of photo-convertable dyes for #highresolutionimaging! 🔴➡️🟢
Many thanks to our amazing speakers!
🔬➡️🧑🔬
Mayeul Collot invited us into the world of photo-convertable dyes for #highresolutionimaging! 🔴➡️🟢
Many thanks to our amazing speakers!
March 18, 2025 at 8:37 PM
Today we had two fantastic key note talks at #TiM2025. Matthew Hartley enlightened us about #DataSharing through @bioimagearchive.bsky.social
🔬➡️🧑🔬
Mayeul Collot invited us into the world of photo-convertable dyes for #highresolutionimaging! 🔴➡️🟢
Many thanks to our amazing speakers!
🔬➡️🧑🔬
Mayeul Collot invited us into the world of photo-convertable dyes for #highresolutionimaging! 🔴➡️🟢
Many thanks to our amazing speakers!
Learning about image segmentation tools in napari/python with @jo-soltwedel.bsky.social & @zoca-biodev.bsky.social at the #TiM2025.
Excellent Workshops and great people here in Münsingen. 🎓🧑🔬 #gerbi-gmb
Excellent Workshops and great people here in Münsingen. 🎓🧑🔬 #gerbi-gmb
March 18, 2025 at 4:09 PM
Learning about image segmentation tools in napari/python with @jo-soltwedel.bsky.social & @zoca-biodev.bsky.social at the #TiM2025.
Excellent Workshops and great people here in Münsingen. 🎓🧑🔬 #gerbi-gmb
Excellent Workshops and great people here in Münsingen. 🎓🧑🔬 #gerbi-gmb
Bugra Özdemir from @eurobioimaging.bsky.social BioHub demonstrating how to work with #OMEZarr at the #TiM2025 Conference in Münsingen. We're having a great time at TiM and are thrilled to see the power of OME-Zarr in this hands-on workshop.
March 17, 2025 at 4:23 PM
Bugra Özdemir from @eurobioimaging.bsky.social BioHub demonstrating how to work with #OMEZarr at the #TiM2025 Conference in Münsingen. We're having a great time at TiM and are thrilled to see the power of OME-Zarr in this hands-on workshop.