Robert Winkler
@robertwinkler.bsky.social
Developing cutting-edge analytical platforms for comprehensive studies of biological systems. Specializing in ambient ionization mass spectrometry profiling, imaging, and real-time volatile organic compounds (VOCs) detection.
🎉 Honored to be listed in the World's Top 2% Scientists Network in my specialty of “Analytical Chemistry”! 🎉
November 6, 2025 at 5:19 PM
🎉 Honored to be listed in the World's Top 2% Scientists Network in my specialty of “Analytical Chemistry”! 🎉
🚀 ESIprot—the open-source software for calculating protein weights from ESI mass spectrometry data—has moved to new, more sustainable locations!
✅ The source code is now hosted on Codeberg:
🔗 codeberg.org/LabABI/ESIprot
✅ ESIprot Online is now available at:
🔗 www.nube-gran.de/esiprot/esip...
✅ The source code is now hosted on Codeberg:
🔗 codeberg.org/LabABI/ESIprot
✅ ESIprot Online is now available at:
🔗 www.nube-gran.de/esiprot/esip...
ESIprot
ESIprot is a program for deconvoluting mass spectrometry data and calculating the molecular weight of proteins, as described in Winkler R.: ESIprot: A universal tool for charge state determination and...
codeberg.org
October 31, 2025 at 5:16 PM
🚀 ESIprot—the open-source software for calculating protein weights from ESI mass spectrometry data—has moved to new, more sustainable locations!
✅ The source code is now hosted on Codeberg:
🔗 codeberg.org/LabABI/ESIprot
✅ ESIprot Online is now available at:
🔗 www.nube-gran.de/esiprot/esip...
✅ The source code is now hosted on Codeberg:
🔗 codeberg.org/LabABI/ESIprot
✅ ESIprot Online is now available at:
🔗 www.nube-gran.de/esiprot/esip...
We’re thrilled to share that our laboratory has contributed to a groundbreaking Perspective in Nature Genetics (2025), led by Prof. Tiannan Guo of Westlake University, that introduces a standardized framework for circulating blood proteomics. Read the full paper: doi.org/10.1038/s415...
September 23, 2025 at 3:54 PM
We’re thrilled to share that our laboratory has contributed to a groundbreaking Perspective in Nature Genetics (2025), led by Prof. Tiannan Guo of Westlake University, that introduces a standardized framework for circulating blood proteomics. Read the full paper: doi.org/10.1038/s415...
JuliaMSI is a high-performance platform for mass spectrometry imaging data analyses: 5x faster than R, contrast optimization, 2D/3D mapping, open formats (.imzML), and a user-friendly GUI. Congratulations to first author Julian, an outstanding undergraduate!
#MSI @imsis-americas.bsky.social
#MSI @imsis-americas.bsky.social
September 11, 2025 at 8:50 PM
JuliaMSI is a high-performance platform for mass spectrometry imaging data analyses: 5x faster than R, contrast optimization, 2D/3D mapping, open formats (.imzML), and a user-friendly GUI. Congratulations to first author Julian, an outstanding undergraduate!
#MSI @imsis-americas.bsky.social
#MSI @imsis-americas.bsky.social
🎉 Big Congrats to Nancy Shyrley Garcia-Rojas! 🎉
Our almost-Dr(a). of the LabABI is an inventor now; she just received an industrial design registration related to the Open SprayBot for metabolic screening. (doi.org/10.1016/j.oh...).
#Innovation #MetabolicResearch #OpenScience #Patent #WomenInSTEM
Our almost-Dr(a). of the LabABI is an inventor now; she just received an industrial design registration related to the Open SprayBot for metabolic screening. (doi.org/10.1016/j.oh...).
#Innovation #MetabolicResearch #OpenScience #Patent #WomenInSTEM
August 13, 2025 at 8:24 PM
🎉 Big Congrats to Nancy Shyrley Garcia-Rojas! 🎉
Our almost-Dr(a). of the LabABI is an inventor now; she just received an industrial design registration related to the Open SprayBot for metabolic screening. (doi.org/10.1016/j.oh...).
#Innovation #MetabolicResearch #OpenScience #Patent #WomenInSTEM
Our almost-Dr(a). of the LabABI is an inventor now; she just received an industrial design registration related to the Open SprayBot for metabolic screening. (doi.org/10.1016/j.oh...).
#Innovation #MetabolicResearch #OpenScience #Patent #WomenInSTEM
Reposted by Robert Winkler
DIA-NN 2.2.0 is released! The new DIA-NN 2.2.0 Enterprise achieves up to ~1.6x median speedup on 64-cores under Windows (please see benchmark below). Release notes: github.com/vdemichev/Di..., download (Academia): github.com/vdemichev/Di...
May 30, 2025 at 8:36 AM
DIA-NN 2.2.0 is released! The new DIA-NN 2.2.0 Enterprise achieves up to ~1.6x median speedup on 64-cores under Windows (please see benchmark below). Release notes: github.com/vdemichev/Di..., download (Academia): github.com/vdemichev/Di...
MASSyPupX: A FREE, open-source platform for off-site processing of shotgun DDA and DIA proteomics data.
✅ Runs on USB, PC, or server
✅ Pre-installed tools & libraries
✅ Perfect for education, collaboration & resource-limited labs
doi.org/10.1016/j.jp...
#Proteomics #DDA #DIA #Bioinformatics #FOSS
✅ Runs on USB, PC, or server
✅ Pre-installed tools & libraries
✅ Perfect for education, collaboration & resource-limited labs
doi.org/10.1016/j.jp...
#Proteomics #DDA #DIA #Bioinformatics #FOSS
August 6, 2025 at 4:41 PM
MASSyPupX: A FREE, open-source platform for off-site processing of shotgun DDA and DIA proteomics data.
✅ Runs on USB, PC, or server
✅ Pre-installed tools & libraries
✅ Perfect for education, collaboration & resource-limited labs
doi.org/10.1016/j.jp...
#Proteomics #DDA #DIA #Bioinformatics #FOSS
✅ Runs on USB, PC, or server
✅ Pre-installed tools & libraries
✅ Perfect for education, collaboration & resource-limited labs
doi.org/10.1016/j.jp...
#Proteomics #DDA #DIA #Bioinformatics #FOSS
🌟Call for Papers🌟
📚 #Artificialintelligence and #MachineLearning in #Metabolomics
👨🔬Guest Editor: Prof. Dr. Robert Winkler
Of course, #MassSpectrometry #Imaging is also welcome.
🔗More Info: www.mdpi.com/journal/meta...
⏰ Submission Deadline: 31 January 2026
📚 #Artificialintelligence and #MachineLearning in #Metabolomics
👨🔬Guest Editor: Prof. Dr. Robert Winkler
Of course, #MassSpectrometry #Imaging is also welcome.
🔗More Info: www.mdpi.com/journal/meta...
⏰ Submission Deadline: 31 January 2026
July 3, 2025 at 6:21 PM
🌟Call for Papers🌟
📚 #Artificialintelligence and #MachineLearning in #Metabolomics
👨🔬Guest Editor: Prof. Dr. Robert Winkler
Of course, #MassSpectrometry #Imaging is also welcome.
🔗More Info: www.mdpi.com/journal/meta...
⏰ Submission Deadline: 31 January 2026
📚 #Artificialintelligence and #MachineLearning in #Metabolomics
👨🔬Guest Editor: Prof. Dr. Robert Winkler
Of course, #MassSpectrometry #Imaging is also welcome.
🔗More Info: www.mdpi.com/journal/meta...
⏰ Submission Deadline: 31 January 2026
Patent approval for our power supply designed for applications in ambient ionization mass spectrometry (AIMS). Combined with our 3D-printed low-temperature plasma probe, it is excellent for imaging experiments of fresh biological tissues under ambient conditions (pubs.acs.org/doi/10.1021/...).
May 14, 2025 at 10:14 PM
Patent approval for our power supply designed for applications in ambient ionization mass spectrometry (AIMS). Combined with our 3D-printed low-temperature plasma probe, it is excellent for imaging experiments of fresh biological tissues under ambient conditions (pubs.acs.org/doi/10.1021/...).