Vivek Rai
@raivivek.bsky.social
learning biology through code ✨ | migrated from https://x.com/raivivek_
years ago, when I was still figuring out my scientific identity as a computational biologist, I stumbled upon Bosco Ho's personal website. it was one of the most beautiful sites I had seen with content that inspired me in many ways. think that's quite fitting for a first post www.boscoh.com #biology
boscoh.com
www.boscoh.com
November 17, 2024 at 1:11 AM
years ago, when I was still figuring out my scientific identity as a computational biologist, I stumbled upon Bosco Ho's personal website. it was one of the most beautiful sites I had seen with content that inspired me in many ways. think that's quite fitting for a first post www.boscoh.com #biology
Hey everyone! I will be migrating from this platform to https://bsky.app/profile/raivivek.bsky.social
March 11, 2025 at 1:34 AM
Hey everyone! I will be migrating from this platform to https://bsky.app/profile/raivivek.bsky.social
I wrote a thin wrapper around #Snakemake to help you quickly monitor your Snakemake runs. It simply parses your snakemake logs! Do try - https://github.com/raivivek/snakelog
#bioinformatics #opensource #biology #code #workflows #sequencing #genomics
#bioinformatics #opensource #biology #code #workflows #sequencing #genomics
March 11, 2025 at 1:34 AM
I wrote a thin wrapper around #Snakemake to help you quickly monitor your Snakemake runs. It simply parses your snakemake logs! Do try - https://github.com/raivivek/snakelog
#bioinformatics #opensource #biology #code #workflows #sequencing #genomics
#bioinformatics #opensource #biology #code #workflows #sequencing #genomics
#Wikipedia is hosting a "Celebrate Women!" month — help by contributing content, edits, or revisions close to the gender representation gap on Wikipedia. See how you can help: https://meta.wikimedia.org/wiki/Celebrate_Women #WomensMonth
March 11, 2025 at 1:34 AM
#Wikipedia is hosting a "Celebrate Women!" month — help by contributing content, edits, or revisions close to the gender representation gap on Wikipedia. See how you can help: https://meta.wikimedia.org/wiki/Celebrate_Women #WomensMonth
#TIL (Today I learned) that #Overleaf provides a git interface to your documents! You can compile locally and make changes offline and sync with online version with #git. Honestly, this makes online/offline transition very smooth! #writingtips
March 11, 2025 at 1:34 AM
#TIL (Today I learned) that #Overleaf provides a git interface to your documents! You can compile locally and make changes offline and sync with online version with #git. Honestly, this makes online/offline transition very smooth! #writingtips
I just donated to @Wikipedia. Support free knowledge! #iloveWikipedia https://donate.wikimedia.org
March 11, 2025 at 1:34 AM
I just donated to @Wikipedia. Support free knowledge! #iloveWikipedia https://donate.wikimedia.org
Just stumbled upon a website that wouldn't take same first name and last name! Quite ridiculous and reminded me of https://github.com/kdeldycke/awesome-falsehood — a list of #falsehoods #programmers believe in.
March 11, 2025 at 1:34 AM
Just stumbled upon a website that wouldn't take same first name and last name! Quite ridiculous and reminded me of https://github.com/kdeldycke/awesome-falsehood — a list of #falsehoods #programmers believe in.
(1 / 2) Got to learn about important issues on fairness, accountability, and transparency (FAT) in ML (though broadly applicable) from @timnitGebru's excellent talk at @um_midas seminar! Will retweet when recording is available.
My main take away points: (...)
My main take away points: (...)
March 11, 2025 at 1:34 AM
(1 / 2) Got to learn about important issues on fairness, accountability, and transparency (FAT) in ML (though broadly applicable) from @timnitGebru's excellent talk at @um_midas seminar! Will retweet when recording is available.
My main take away points: (...)
My main take away points: (...)
Feeling excited about my recently acquired Pomodoro timer! #inspired #pomodoro
March 11, 2025 at 1:34 AM
Feeling excited about my recently acquired Pomodoro timer! #inspired #pomodoro
> Break the Bubble allows you to find out which books you are statistically unlikely to read. The more narrow your reading tastes are, the more you will be challenged by the results.
https://abooklikefoo.com/escape/
https://abooklikefoo.com/escape/
March 11, 2025 at 1:34 AM
> Break the Bubble allows you to find out which books you are statistically unlikely to read. The more narrow your reading tastes are, the more you will be challenged by the results.
https://abooklikefoo.com/escape/
https://abooklikefoo.com/escape/
Thanks @digitalocean! But also thanks to #Bioconda and #conda_forge for accepting my contributions! :D
March 11, 2025 at 1:34 AM
Thanks @digitalocean! But also thanks to #Bioconda and #conda_forge for accepting my contributions! :D
I just donated to @Wikipedia. Support free knowledge! #iloveWikipedia https://donate.wikimedia.org/?utm_medium=SocialMedia&utm_campaign=ThankYouPage&utm_source=Twitter&uselang=en
March 11, 2025 at 1:34 AM
I just donated to @Wikipedia. Support free knowledge! #iloveWikipedia https://donate.wikimedia.org/?utm_medium=SocialMedia&utm_campaign=ThankYouPage&utm_source=Twitter&uselang=en
I was tired of looking up how to convert one bioinformatics format to another, so I created #convert-this-to-that. Work in progress but sneek peek at https://convert.raivivek.in
#bioinformatics #opensource
#bioinformatics #opensource
March 11, 2025 at 1:34 AM
I was tired of looking up how to convert one bioinformatics format to another, so I created #convert-this-to-that. Work in progress but sneek peek at https://convert.raivivek.in
#bioinformatics #opensource
#bioinformatics #opensource
I switched from using MS OneNote to simple markdown notes organized in knowledge graphs such as @RoamResearch / @obsdmd a couple of months ago and it has been working out great! Highly recommended as a simple yet powerful #notetaking mechanism. #AcademicChatter #phdchat
March 11, 2025 at 1:34 AM
I switched from using MS OneNote to simple markdown notes organized in knowledge graphs such as @RoamResearch / @obsdmd a couple of months ago and it has been working out great! Highly recommended as a simple yet powerful #notetaking mechanism. #AcademicChatter #phdchat
MeetingBar is an excellent free and open-source tool for keeping track of all your virtual meetings! It will sync automatically to your calendar, so no need to manually enter items. #opensource
https://github.com/leits/MeetingBar
https://github.com/leits/MeetingBar
March 11, 2025 at 1:34 AM
MeetingBar is an excellent free and open-source tool for keeping track of all your virtual meetings! It will sync automatically to your calendar, so no need to manually enter items. #opensource
https://github.com/leits/MeetingBar
https://github.com/leits/MeetingBar
Was browsing GitHub for RStudio themes and stumbled across this repository. Well, thanks for the heads up patrickshox, I won't be using your Mojave Dark theme after all.
https://github.com/patrickshox/Mojave-Dark-RStudio-Theme
https://github.com/patrickshox/Mojave-Dark-RStudio-Theme
March 11, 2025 at 1:34 AM
Was browsing GitHub for RStudio themes and stumbled across this repository. Well, thanks for the heads up patrickshox, I won't be using your Mojave Dark theme after all.
https://github.com/patrickshox/Mojave-Dark-RStudio-Theme
https://github.com/patrickshox/Mojave-Dark-RStudio-Theme
Everyone, please take care of yourself in these extremely difficult and uncertain times.
March 11, 2025 at 1:34 AM
Everyone, please take care of yourself in these extremely difficult and uncertain times.
#rstats #bioinformatics folks -- what do you prefer for exploratory analysis and quick figures, and why?
March 11, 2025 at 1:34 AM
#rstats #bioinformatics folks -- what do you prefer for exploratory analysis and quick figures, and why?
If you enjoy ComplexHeatmap, you might like tidyHeatmap -- a tidy wrapper around ComplexHeatmap. https://github.com/stemangiola/tidyHeatmap #rstats #tidyverse #heatmap #ggplot2
March 11, 2025 at 1:34 AM
If you enjoy ComplexHeatmap, you might like tidyHeatmap -- a tidy wrapper around ComplexHeatmap. https://github.com/stemangiola/tidyHeatmap #rstats #tidyverse #heatmap #ggplot2
Lab that have migrated from hg19 ref to hg38, how did you lead your transition? If not, when you plan to do it? Looking for some #AcademicTwitter #AcademicChatter wisdom! @AcademicChatter
March 11, 2025 at 1:34 AM
Lab that have migrated from hg19 ref to hg38, how did you lead your transition? If not, when you plan to do it? Looking for some #AcademicTwitter #AcademicChatter wisdom! @AcademicChatter
Install a package for someone, you teach them for a day
Install a package manager, and you teach them for a lifetime.
Install a package manager, and you teach them for a lifetime.
March 11, 2025 at 1:34 AM
Install a package for someone, you teach them for a day
Install a package manager, and you teach them for a lifetime.
Install a package manager, and you teach them for a lifetime.
My life in 7 pictures. Day 6 of challenge - no words, no people. I was challenged by @theparkerlab :D I challenge everyone to continue focusing on their well being.
March 11, 2025 at 1:34 AM
My life in 7 pictures. Day 6 of challenge - no words, no people. I was challenged by @theparkerlab :D I challenge everyone to continue focusing on their well being.
My life in 7 pictures. Day 5 of challenge - no words, no people. I was challenged by @theparkerlab :D https://x.com/raivivek_/status/1254280627303653377/photo/1
March 11, 2025 at 1:34 AM
My life in 7 pictures. Day 5 of challenge - no words, no people. I was challenged by @theparkerlab :D https://x.com/raivivek_/status/1254280627303653377/photo/1
My life in 7 pictures. Day 4 of challenge - no words, no people. I was challenged by @theparkerlab :D https://x.com/raivivek_/status/1253572802684354560/photo/1
March 11, 2025 at 1:35 AM
My life in 7 pictures. Day 4 of challenge - no words, no people. I was challenged by @theparkerlab :D https://x.com/raivivek_/status/1253572802684354560/photo/1
My life in 7 pictures. Day 3 - no words, no people and challenge a new person every day. I was challenged by @theparkerlab. :D
March 11, 2025 at 1:35 AM
My life in 7 pictures. Day 3 - no words, no people and challenge a new person every day. I was challenged by @theparkerlab. :D