Perrimon Lab
@perrimonlab.bsky.social
Dr. Norbert Perrimon's lab at Harvard Medical School researches functional genomics, cell circuitry, and tissue homeostasis in Drosophila melanogaster.
https://perrimon.med.harvard.edu/
https://perrimon.med.harvard.edu/
New paper: Phage display-mediated immuno-PCR to detect low-abundance secreted proteins in Drosophila
Han, Xia, Ah-Ram Kim, Filine, Stoneburner, Miao, Liu, Zirin, Perrimon
bioRxiv 2025.10.31.685841; doi: doi.org/10.1101/2025...
Han, Xia, Ah-Ram Kim, Filine, Stoneburner, Miao, Liu, Zirin, Perrimon
bioRxiv 2025.10.31.685841; doi: doi.org/10.1101/2025...
Phage display-mediated immuno-PCR to detect low-abundance secreted proteins in Drosophila
Circulating hormones, that mediate communications across organs to maintain physiological balance, are commonly detected and quantified using enzyme-linked immunosorbent assays (ELISAs). However, whil...
doi.org
November 1, 2025 at 12:26 PM
New paper: Phage display-mediated immuno-PCR to detect low-abundance secreted proteins in Drosophila
Han, Xia, Ah-Ram Kim, Filine, Stoneburner, Miao, Liu, Zirin, Perrimon
bioRxiv 2025.10.31.685841; doi: doi.org/10.1101/2025...
Han, Xia, Ah-Ram Kim, Filine, Stoneburner, Miao, Liu, Zirin, Perrimon
bioRxiv 2025.10.31.685841; doi: doi.org/10.1101/2025...
New paper: A Structure-Guided Kinase-Transcription Factor Interactome Atlas Reveals Docking Landscapes of the Kinome
Kim, Huang, Johnson, Yaron-Barir, Keven Wang, Cantley, Hu, Perrimon
bioRxiv 2025.10.10.681672; doi: doi.org/10.1101/2025...
Kim, Huang, Johnson, Yaron-Barir, Keven Wang, Cantley, Hu, Perrimon
bioRxiv 2025.10.10.681672; doi: doi.org/10.1101/2025...
A Structure-Guided Kinase-Transcription Factor Interactome Atlas Reveals Docking Landscapes of the Kinome
Protein kinases orchestrate cellular processes through phosphorylation, yet the structural basis for their specific binding partner interactions remains largely unmapped. Here, we present a structure-...
doi.org
October 12, 2025 at 8:51 PM
New paper: A Structure-Guided Kinase-Transcription Factor Interactome Atlas Reveals Docking Landscapes of the Kinome
Kim, Huang, Johnson, Yaron-Barir, Keven Wang, Cantley, Hu, Perrimon
bioRxiv 2025.10.10.681672; doi: doi.org/10.1101/2025...
Kim, Huang, Johnson, Yaron-Barir, Keven Wang, Cantley, Hu, Perrimon
bioRxiv 2025.10.10.681672; doi: doi.org/10.1101/2025...
New paper: A family of lethal exotoxins defined by cell entry via the Attractin receptor
Viswanatha, Lee, Robins, Mameli, Hu, Kim, Hashmi, Hiroshi , Prakash, Butnaru, Churchman, Mohr, Mekalanos, Perrimon
doi: doi.org/10.1101/2025...
Viswanatha, Lee, Robins, Mameli, Hu, Kim, Hashmi, Hiroshi , Prakash, Butnaru, Churchman, Mohr, Mekalanos, Perrimon
doi: doi.org/10.1101/2025...
A family of lethal exotoxins defined by cell entry via the Attractin receptor
Although bacterial genomes encode numerous potential toxins, it is unclear how evolution drives the specificity of these important virulence factors. Using an insect CRISPR screen, we identified the t...
doi.org
October 9, 2025 at 1:33 PM
New paper: A family of lethal exotoxins defined by cell entry via the Attractin receptor
Viswanatha, Lee, Robins, Mameli, Hu, Kim, Hashmi, Hiroshi , Prakash, Butnaru, Churchman, Mohr, Mekalanos, Perrimon
doi: doi.org/10.1101/2025...
Viswanatha, Lee, Robins, Mameli, Hu, Kim, Hashmi, Hiroshi , Prakash, Butnaru, Churchman, Mohr, Mekalanos, Perrimon
doi: doi.org/10.1101/2025...
New paper: Hepatic ceramide synthesis links systemic inflammation to organelle dysfunction in cancer
Liu, Miao, Wang, Ezequiel, Kim, Zhang, Sun, Binari, Asara, Yanhui Hu, Goncalves, Janowitz, Perrimon
doi: doi.org/10.1101/2025...
Liu, Miao, Wang, Ezequiel, Kim, Zhang, Sun, Binari, Asara, Yanhui Hu, Goncalves, Janowitz, Perrimon
doi: doi.org/10.1101/2025...
Hepatic ceramide synthesis links systemic inflammation to organelle dysfunction in cancer
Paraneoplastic syndromes arise when tumor-derived cytokines reprogram distant organs. Although mediators such as Interleukin-6 have been implicated, how these signals impair host organ function remain...
doi.org
October 4, 2025 at 1:13 PM
New paper: Hepatic ceramide synthesis links systemic inflammation to organelle dysfunction in cancer
Liu, Miao, Wang, Ezequiel, Kim, Zhang, Sun, Binari, Asara, Yanhui Hu, Goncalves, Janowitz, Perrimon
doi: doi.org/10.1101/2025...
Liu, Miao, Wang, Ezequiel, Kim, Zhang, Sun, Binari, Asara, Yanhui Hu, Goncalves, Janowitz, Perrimon
doi: doi.org/10.1101/2025...
ww.nbcnews.com
September 16, 2025 at 10:51 AM
www.thecrimson.com/article/2025...
Harvard Funding Cuts Endanger the Massive Fruit Fly Database That Powers Genetic Research
Harvard Funding Cuts Endanger the Massive Fruit Fly Database That Powers Genetic Research
Harvard Funding Cuts Endanger the Massive Fruit Fly Database That Powers Genetic Research | News | The Harvard Crimson
FlyBase lost a multimillion dollar grant when the Trump administration cut off Harvard’s federal funding in May. Now the repository is laying off staff — and researchers worldwide are worried.
www.thecrimson.com
September 9, 2025 at 10:44 AM
www.thecrimson.com/article/2025...
Harvard Funding Cuts Endanger the Massive Fruit Fly Database That Powers Genetic Research
Harvard Funding Cuts Endanger the Massive Fruit Fly Database That Powers Genetic Research
Renal Coenzyme A (CoA) Production Fuels Stem Cell Proliferation and Tumor Growth
Ting Miao, Ying Liu, Mujeeb Qadiri, John M. Asara, Yanhui Hu, Xiaomei Sun, Christian Dibble, Norbert Perrimon
bioRxiv 2025.08.08.669325; doi: doi.org/10.1101/2025...
Ting Miao, Ying Liu, Mujeeb Qadiri, John M. Asara, Yanhui Hu, Xiaomei Sun, Christian Dibble, Norbert Perrimon
bioRxiv 2025.08.08.669325; doi: doi.org/10.1101/2025...
Renal Coenzyme A (CoA) Production Fuels Stem Cell Proliferation and Tumor Growth
Coenzyme A (CoA), derived from Vitamin B5 (VB5), is essential for lipid metabolism, energy production, and cell proliferation. While the intracellular functions of CoA are well characterized, its tiss...
doi.org
August 12, 2025 at 10:57 AM
Renal Coenzyme A (CoA) Production Fuels Stem Cell Proliferation and Tumor Growth
Ting Miao, Ying Liu, Mujeeb Qadiri, John M. Asara, Yanhui Hu, Xiaomei Sun, Christian Dibble, Norbert Perrimon
bioRxiv 2025.08.08.669325; doi: doi.org/10.1101/2025...
Ting Miao, Ying Liu, Mujeeb Qadiri, John M. Asara, Yanhui Hu, Xiaomei Sun, Christian Dibble, Norbert Perrimon
bioRxiv 2025.08.08.669325; doi: doi.org/10.1101/2025...
A Genome-wide CRISPR Screen Reveals ZDHHC8-Dependent Gαq Palmitoylation as a Key Regulator of GPCR Signaling
Muhammad Ahmad, Norbert Perrimon, Raghuvir Viswanatha, Ah-Ram Kim
bioRxiv 2025.08.06.668953; doi: doi.org/10.1101/2025...
Muhammad Ahmad, Norbert Perrimon, Raghuvir Viswanatha, Ah-Ram Kim
bioRxiv 2025.08.06.668953; doi: doi.org/10.1101/2025...
A Genome-wide CRISPR Screen Reveals ZDHHC8-Dependent Gαq Palmitoylation as a Key Regulator of GPCR Signaling
G protein-coupled receptors (GPCRs) that couple to the Gαq signaling pathway control diverse physiological processes, yet the full complement of cellular regulators for this pathway remains unknown. H...
doi.org
August 8, 2025 at 8:50 PM
A Genome-wide CRISPR Screen Reveals ZDHHC8-Dependent Gαq Palmitoylation as a Key Regulator of GPCR Signaling
Muhammad Ahmad, Norbert Perrimon, Raghuvir Viswanatha, Ah-Ram Kim
bioRxiv 2025.08.06.668953; doi: doi.org/10.1101/2025...
Muhammad Ahmad, Norbert Perrimon, Raghuvir Viswanatha, Ah-Ram Kim
bioRxiv 2025.08.06.668953; doi: doi.org/10.1101/2025...
Cheng, C., Liu, Y., Chen, Y., Li, J., Xu, W., Perrimon, N. and Song, W. (2025) The power of Drosophila in modeling cancer cachexia. Adv Exp Med Biol. 482:83-100. doi: 10.1007/978-3-031-97035-1_5. PMID: 40745137
August 1, 2025 at 10:29 AM
Cheng, C., Liu, Y., Chen, Y., Li, J., Xu, W., Perrimon, N. and Song, W. (2025) The power of Drosophila in modeling cancer cachexia. Adv Exp Med Biol. 482:83-100. doi: 10.1007/978-3-031-97035-1_5. PMID: 40745137
Intersecting experimental evolution and CRISPR screens to identify novel insecticide resistance loci
Marconcini, Cruchet, Goswami, Viswanatha, Butnaru, De, Roselli, Hadjieconomou, Perrimon, Mohr, Benton
bioRxiv 2025.07.23.666417; doi: doi.org/10.1101/2025...
Marconcini, Cruchet, Goswami, Viswanatha, Butnaru, De, Roselli, Hadjieconomou, Perrimon, Mohr, Benton
bioRxiv 2025.07.23.666417; doi: doi.org/10.1101/2025...
Intersecting experimental evolution and CRISPR screens to identify novel insecticide resistance loci
Understanding the evolution of insect resistance to natural and artificial poisons is important both to appreciate the adaptation of species to toxic ecological niches and manage pest insects. While r...
doi.org
July 28, 2025 at 4:47 PM
Intersecting experimental evolution and CRISPR screens to identify novel insecticide resistance loci
Marconcini, Cruchet, Goswami, Viswanatha, Butnaru, De, Roselli, Hadjieconomou, Perrimon, Mohr, Benton
bioRxiv 2025.07.23.666417; doi: doi.org/10.1101/2025...
Marconcini, Cruchet, Goswami, Viswanatha, Butnaru, De, Roselli, Hadjieconomou, Perrimon, Mohr, Benton
bioRxiv 2025.07.23.666417; doi: doi.org/10.1101/2025...
ScGOclust: leveraging gene ontology to find functionally analogous cell types between distant species.
Song Y, Hu Y, Dow J, Perrimon N, Papatheodorou I. Bioinformatics. 2025 Jul 1;41(Supplement_1):i571-i579. doi: 10.1093/bioinformatics/btaf195. PMID: 40662793
Song Y, Hu Y, Dow J, Perrimon N, Papatheodorou I. Bioinformatics. 2025 Jul 1;41(Supplement_1):i571-i579. doi: 10.1093/bioinformatics/btaf195. PMID: 40662793
July 16, 2025 at 4:39 AM
ScGOclust: leveraging gene ontology to find functionally analogous cell types between distant species.
Song Y, Hu Y, Dow J, Perrimon N, Papatheodorou I. Bioinformatics. 2025 Jul 1;41(Supplement_1):i571-i579. doi: 10.1093/bioinformatics/btaf195. PMID: 40662793
Song Y, Hu Y, Dow J, Perrimon N, Papatheodorou I. Bioinformatics. 2025 Jul 1;41(Supplement_1):i571-i579. doi: 10.1093/bioinformatics/btaf195. PMID: 40662793
New Paper:
Viswanatha , Entwisle, Hu, Kim, Reap, Butnaru, Qadiri, Mohr, Perrimon
Higher resolution pooled genome-wide
CRISPR knockout screening in Drosophila
cells using integration and anti-
CRISPR (IntAC) Nature Communications
doi.org/10.1038/s414...
Viswanatha , Entwisle, Hu, Kim, Reap, Butnaru, Qadiri, Mohr, Perrimon
Higher resolution pooled genome-wide
CRISPR knockout screening in Drosophila
cells using integration and anti-
CRISPR (IntAC) Nature Communications
doi.org/10.1038/s414...
Higher resolution pooled genome-wide CRISPR knockout screening in Drosophila cells using integration and anti-CRISPR (IntAC) - Nature Communications
Genome-wide CRISPR screens map how genes support survival and contribute to diverse biological functions. Here, the authors use antiCRISPR to enhance genome-wide CRISPR screening in Drosophila and gen...
doi.org
July 15, 2025 at 4:17 AM
New Paper:
Viswanatha , Entwisle, Hu, Kim, Reap, Butnaru, Qadiri, Mohr, Perrimon
Higher resolution pooled genome-wide
CRISPR knockout screening in Drosophila
cells using integration and anti-
CRISPR (IntAC) Nature Communications
doi.org/10.1038/s414...
Viswanatha , Entwisle, Hu, Kim, Reap, Butnaru, Qadiri, Mohr, Perrimon
Higher resolution pooled genome-wide
CRISPR knockout screening in Drosophila
cells using integration and anti-
CRISPR (IntAC) Nature Communications
doi.org/10.1038/s414...
New paper: Multi-omic mapping of Drosophila protein secretomes reveals tissue-specific origins and inter-organ trafficking
Bosch et al.
doi: doi.org/10.1101/2025...
Bosch et al.
doi: doi.org/10.1101/2025...
Multi-omic mapping of Drosophila protein secretomes reveals tissue-specific origins and inter-organ trafficking
Secreted proteins regulate many aspects of animal biology and are attractive targets for biomarkers and therapeutics. However, comprehensively identifying the "secretome", along with their tissues of ...
doi.org
July 12, 2025 at 5:40 AM
New paper: Multi-omic mapping of Drosophila protein secretomes reveals tissue-specific origins and inter-organ trafficking
Bosch et al.
doi: doi.org/10.1101/2025...
Bosch et al.
doi: doi.org/10.1101/2025...
New paper: Cholinergic Signaling Modulates Intestinal Pathophysiology in a Drosophila Model of Cystic Fibrosis
Elizabeth Lane, Afroditi Petsakou, Ying Liu, Weihang Chen, Mujeeb Qadiri, Yanhui Hu, Norbert Perrimon
doi: doi.org/10.1101/2025...
Elizabeth Lane, Afroditi Petsakou, Ying Liu, Weihang Chen, Mujeeb Qadiri, Yanhui Hu, Norbert Perrimon
doi: doi.org/10.1101/2025...
Cholinergic Signaling Modulates Intestinal Pathophysiology in a Drosophila Model of Cystic Fibrosis
Cystic Fibrosis (CF) is a monogenic genetic disease caused by mutations in the Cystic Fibrosis Transmembrane conductance Regulator (CFTR) chloride/bicarbonate channel, which is expressed in certain epithelia cells. Current therapies focus on restoring CFTR function but many gut-related pathologies persist, highlighting the need for complementary treatments to improve the quality of life of patients living with CF. In this study, we use Drosophila melanogaster as a model to investigate the gut-specific effects of Cftr loss. We demonstrate that enterocyte-specific knockdown of Cftr in flies recapitulates several CF pathologies, including reduced intestinal motility, nutrient malabsorption, and decreased energy stores. Using single-nuclei RNA sequencing (snRNA-seq), we identify significant transcriptional changes in the CF model gut, including the upregulation of acetylcholine esterase (Ace, human AChE), which leads to reduced cholinergic signaling. Cholinergic signaling has been shown to affect CFTR function but this is the first time CFTR loss of function has been shown to alter cholinergic signaling. Functional assays confirm that cholinergic sensitivity is diminished in CF guts and restoring cholinergic signaling via Ace knockdown rescues multiple CF-associated phenotypes. Furthermore, we identify the transcription factor Forkhead (Fkh), the Drosophila homolog of human FOXA1/FOXA2, which is known to be a positive regulator of Cftr in the intestine, as a positive regulator of Ace expression in CF guts. This study establishes the Drosophila gut as a powerful model to investigate CF pathogenesis, genetic modifiers, and identifies Ace and Fkh as genetic modifiers. This work also suggests that enhancing cholinergic signaling may represent a viable therapeutic strategy for gastrointestinal manifestations of CF. ### Competing Interest Statement The authors have declared no competing interest. NIDDK, 5F32DK130290-03 Cystic Fibrosis Foundation, https://ror.org/00ax59295, LANE21F0-00816F221
doi.org
July 6, 2025 at 11:04 AM
New paper: Cholinergic Signaling Modulates Intestinal Pathophysiology in a Drosophila Model of Cystic Fibrosis
Elizabeth Lane, Afroditi Petsakou, Ying Liu, Weihang Chen, Mujeeb Qadiri, Yanhui Hu, Norbert Perrimon
doi: doi.org/10.1101/2025...
Elizabeth Lane, Afroditi Petsakou, Ying Liu, Weihang Chen, Mujeeb Qadiri, Yanhui Hu, Norbert Perrimon
doi: doi.org/10.1101/2025...
New paper: Ben Ewen-Campen, Weihang Chen, Sudhir Gopal Tattikota, Ying Liu, Yanhui Hu, Norbert Perrimon The Drosophila proventriculus lacks stem cells but compensates for age-related cell loss via endoreplication-mediated cell growth
doi: doi.org/10.1101/2025...
doi: doi.org/10.1101/2025...
The Drosophila proventriculus lacks stem cells but compensates for age-related cell loss via endoreplication-mediated cell growth
The Drosophila proventriculus is a bulb-shaped structure at the juncture of the foregut and the midgut, which plays important roles in ingestion, peritrophic membrane synthesis, and the immune respons...
doi.org
July 2, 2025 at 8:52 PM
New paper: Ben Ewen-Campen, Weihang Chen, Sudhir Gopal Tattikota, Ying Liu, Yanhui Hu, Norbert Perrimon The Drosophila proventriculus lacks stem cells but compensates for age-related cell loss via endoreplication-mediated cell growth
doi: doi.org/10.1101/2025...
doi: doi.org/10.1101/2025...
Kang et al. (2025) NF-κB-mediated developmental delay extends lifespan in Drosophila PNAS. 122(19):e2420811122. doi: 10.1073/pnas.2420811122.
May 10, 2025 at 11:47 AM
Kang et al. (2025) NF-κB-mediated developmental delay extends lifespan in Drosophila PNAS. 122(19):e2420811122. doi: 10.1073/pnas.2420811122.
Xiao, G. et al. (2025). Intratumor HIF-1a modulates production of a cachectic ligand to cause host wasting. Cell Insight. doi: 10.1016/j.cellin.2025.100247. PMID: 40336592
May 9, 2025 at 10:20 AM
Xiao, G. et al. (2025). Intratumor HIF-1a modulates production of a cachectic ligand to cause host wasting. Cell Insight. doi: 10.1016/j.cellin.2025.100247. PMID: 40336592
TF2TG: an online resource mining the potential gene targets of transcription factors in Drosophila.
Hu Y, Rodiger J, Liu Y, Gao C, Liu Y, Qadiri M, Veal A, Bulyk ML, Perrimon N. Genetics. 2025 May 2:iyaf082. doi: 10.1093/genetics/iyaf082. Online ahead of print. PMID: 40314147
Hu Y, Rodiger J, Liu Y, Gao C, Liu Y, Qadiri M, Veal A, Bulyk ML, Perrimon N. Genetics. 2025 May 2:iyaf082. doi: 10.1093/genetics/iyaf082. Online ahead of print. PMID: 40314147
May 2, 2025 at 11:00 AM
TF2TG: an online resource mining the potential gene targets of transcription factors in Drosophila.
Hu Y, Rodiger J, Liu Y, Gao C, Liu Y, Qadiri M, Veal A, Bulyk ML, Perrimon N. Genetics. 2025 May 2:iyaf082. doi: 10.1093/genetics/iyaf082. Online ahead of print. PMID: 40314147
Hu Y, Rodiger J, Liu Y, Gao C, Liu Y, Qadiri M, Veal A, Bulyk ML, Perrimon N. Genetics. 2025 May 2:iyaf082. doi: 10.1093/genetics/iyaf082. Online ahead of print. PMID: 40314147
Hepatic gluconeogenesis and PDK3 upregulation drive cancer cachexia in flies and mice. Liu, Dantas, Ferrer, Miao T, Qadiri, Liu, Comjean , Davidson, Perrier, Ahmed, Hu, Goncalves, Janowitz, Perrimon. Nat Metab. 2025 doi: 10.1038/s42255-025-01265-2. PMID: 40275022
April 25, 2025 at 11:22 AM
Hepatic gluconeogenesis and PDK3 upregulation drive cancer cachexia in flies and mice. Liu, Dantas, Ferrer, Miao T, Qadiri, Liu, Comjean , Davidson, Perrier, Ahmed, Hu, Goncalves, Janowitz, Perrimon. Nat Metab. 2025 doi: 10.1038/s42255-025-01265-2. PMID: 40275022
New publication!
Sex and Depot Specific Adipocyte Proteome Profiling In Vivo via Intracellular Proximity Labeling.
Simonian TL, Meyer AS, Guo J, Sha J, Wohlschlegel JA, Droujinine IA, Perrimon N, McMahon AP. Compr Physiol. 2025 Apr;15(2):e70007. doi: 10.1002/cph4.70007. PMID: 40181252
Sex and Depot Specific Adipocyte Proteome Profiling In Vivo via Intracellular Proximity Labeling.
Simonian TL, Meyer AS, Guo J, Sha J, Wohlschlegel JA, Droujinine IA, Perrimon N, McMahon AP. Compr Physiol. 2025 Apr;15(2):e70007. doi: 10.1002/cph4.70007. PMID: 40181252
April 14, 2025 at 2:24 PM
New publication!
Sex and Depot Specific Adipocyte Proteome Profiling In Vivo via Intracellular Proximity Labeling.
Simonian TL, Meyer AS, Guo J, Sha J, Wohlschlegel JA, Droujinine IA, Perrimon N, McMahon AP. Compr Physiol. 2025 Apr;15(2):e70007. doi: 10.1002/cph4.70007. PMID: 40181252
Sex and Depot Specific Adipocyte Proteome Profiling In Vivo via Intracellular Proximity Labeling.
Simonian TL, Meyer AS, Guo J, Sha J, Wohlschlegel JA, Droujinine IA, Perrimon N, McMahon AP. Compr Physiol. 2025 Apr;15(2):e70007. doi: 10.1002/cph4.70007. PMID: 40181252