@naimavahab.bsky.social
Reposted
A book chapter from the lab:
This chapter explores multi-omics integrative studies enabled by machine learning, presenting an overview of state-of-the-art methodologies and the foundational background. Suitable for both beginners & advanced bioinformaticians
www.sciencedirect.com/science/chap...
This chapter explores multi-omics integrative studies enabled by machine learning, presenting an overview of state-of-the-art methodologies and the foundational background. Suitable for both beginners & advanced bioinformaticians
www.sciencedirect.com/science/chap...
Multi‐omics applications in health and diseases
Multi-omics research has transformed our ability to study biological systems by capturing information across multiple molecular layers, including geno…
www.sciencedirect.com
January 30, 2026 at 10:13 PM
A book chapter from the lab:
This chapter explores multi-omics integrative studies enabled by machine learning, presenting an overview of state-of-the-art methodologies and the foundational background. Suitable for both beginners & advanced bioinformaticians
www.sciencedirect.com/science/chap...
This chapter explores multi-omics integrative studies enabled by machine learning, presenting an overview of state-of-the-art methodologies and the foundational background. Suitable for both beginners & advanced bioinformaticians
www.sciencedirect.com/science/chap...
Reposted
Delighted to share the publication of our paper "𝘈 𝘤𝘰𝘮𝘱𝘢𝘳𝘢𝘵𝘪𝘷𝘦 𝘦𝘷𝘢𝘭𝘶𝘢𝘵𝘪𝘰𝘯 𝘰𝘧 𝘩𝘢𝘯𝘥𝘭𝘪𝘯𝘨 𝘮𝘪𝘴𝘴𝘪𝘯𝘨 𝘥𝘢𝘵𝘢 𝘱𝘰𝘪𝘯𝘵𝘴 𝘢𝘯𝘥 𝘮𝘰𝘥𝘢𝘭𝘪𝘵𝘪𝘦𝘴 𝘪𝘯 𝘦𝘭𝘦𝘤𝘵𝘳𝘰𝘯𝘪𝘤 𝘩𝘦𝘢𝘭𝘵𝘩 𝘳𝘦𝘤𝘰𝘳𝘥𝘴" in the 𝗜𝗻𝘁𝗲𝗿𝗻𝗮𝘁𝗶𝗼𝗻𝗮𝗹 𝗝𝗼𝘂𝗿𝗻𝗮𝗹 𝗼𝗳 𝗠𝗲𝗱𝗶𝗰𝗮𝗹 𝗜𝗻𝗳𝗼𝗿𝗺𝗮𝘁𝗶𝗰𝘀!
www.sciencedirect.com/science/arti...
www.sciencedirect.com/science/arti...
A comparative evaluation of handling missing data points and modalities in electronic health records
Background: Healthcare data, generally available as electronic health records (EHR), provide rich insight for predictive modelling. A common challenge…
www.sciencedirect.com
January 21, 2026 at 11:28 PM
Delighted to share the publication of our paper "𝘈 𝘤𝘰𝘮𝘱𝘢𝘳𝘢𝘵𝘪𝘷𝘦 𝘦𝘷𝘢𝘭𝘶𝘢𝘵𝘪𝘰𝘯 𝘰𝘧 𝘩𝘢𝘯𝘥𝘭𝘪𝘯𝘨 𝘮𝘪𝘴𝘴𝘪𝘯𝘨 𝘥𝘢𝘵𝘢 𝘱𝘰𝘪𝘯𝘵𝘴 𝘢𝘯𝘥 𝘮𝘰𝘥𝘢𝘭𝘪𝘵𝘪𝘦𝘴 𝘪𝘯 𝘦𝘭𝘦𝘤𝘵𝘳𝘰𝘯𝘪𝘤 𝘩𝘦𝘢𝘭𝘵𝘩 𝘳𝘦𝘤𝘰𝘳𝘥𝘴" in the 𝗜𝗻𝘁𝗲𝗿𝗻𝗮𝘁𝗶𝗼𝗻𝗮𝗹 𝗝𝗼𝘂𝗿𝗻𝗮𝗹 𝗼𝗳 𝗠𝗲𝗱𝗶𝗰𝗮𝗹 𝗜𝗻𝗳𝗼𝗿𝗺𝗮𝘁𝗶𝗰𝘀!
www.sciencedirect.com/science/arti...
www.sciencedirect.com/science/arti...
Reposted
Congratulations @aashishbhandari.com 👏
Delighted to share the publication of our paper "𝘈 𝘤𝘰𝘮𝘱𝘢𝘳𝘢𝘵𝘪𝘷𝘦 𝘦𝘷𝘢𝘭𝘶𝘢𝘵𝘪𝘰𝘯 𝘰𝘧 𝘩𝘢𝘯𝘥𝘭𝘪𝘯𝘨 𝘮𝘪𝘴𝘴𝘪𝘯𝘨 𝘥𝘢𝘵𝘢 𝘱𝘰𝘪𝘯𝘵𝘴 𝘢𝘯𝘥 𝘮𝘰𝘥𝘢𝘭𝘪𝘵𝘪𝘦𝘴 𝘪𝘯 𝘦𝘭𝘦𝘤𝘵𝘳𝘰𝘯𝘪𝘤 𝘩𝘦𝘢𝘭𝘵𝘩 𝘳𝘦𝘤𝘰𝘳𝘥𝘴" in the 𝗜𝗻𝘁𝗲𝗿𝗻𝗮𝘁𝗶𝗼𝗻𝗮𝗹 𝗝𝗼𝘂𝗿𝗻𝗮𝗹 𝗼𝗳 𝗠𝗲𝗱𝗶𝗰𝗮𝗹 𝗜𝗻𝗳𝗼𝗿𝗺𝗮𝘁𝗶𝗰𝘀!
www.sciencedirect.com/science/arti...
www.sciencedirect.com/science/arti...
A comparative evaluation of handling missing data points and modalities in electronic health records
Background: Healthcare data, generally available as electronic health records (EHR), provide rich insight for predictive modelling. A common challenge…
www.sciencedirect.com
January 22, 2026 at 1:42 AM
Congratulations @aashishbhandari.com 👏
Reposted
Our latest paper presents EHR-QC 2.0, a major upgrade to our open-source pipeline for preparing and standardising biomedical & genomic EHR data for machine learning.
🔍 What’s new:
LLM-enabled clinical vocabulary mapping
Support for FHIR
A web-based interface
🔗 papers.ssrn.com/sol3/papers....
🔍 What’s new:
LLM-enabled clinical vocabulary mapping
Support for FHIR
A web-based interface
🔗 papers.ssrn.com/sol3/papers....
<span>An accessible pipeline for LLM-driven medical concept mapping, automated OMOP and FHIR conversion</span>
Background:Our previous work introduced the open-source EHR-QC pipeline. This pipeline implements extraction, transform and load (ETL), pre-processing and quali
papers.ssrn.com
October 14, 2025 at 9:25 PM
Our latest paper presents EHR-QC 2.0, a major upgrade to our open-source pipeline for preparing and standardising biomedical & genomic EHR data for machine learning.
🔍 What’s new:
LLM-enabled clinical vocabulary mapping
Support for FHIR
A web-based interface
🔗 papers.ssrn.com/sol3/papers....
🔍 What’s new:
LLM-enabled clinical vocabulary mapping
Support for FHIR
A web-based interface
🔗 papers.ssrn.com/sol3/papers....
Reposted
Our latest review explores how RNA foundation models are reshaping predictions of ncRNA structure & function.
We highlight key architectures, training strategies, and open challenges to guide the next phase of RNA-AI research.
Read here 👉 link.springer.com/article/10.1...
We highlight key architectures, training strategies, and open challenges to guide the next phase of RNA-AI research.
Read here 👉 link.springer.com/article/10.1...
Advancing non-coding RNA annotation with RNA sequence foundation models: structure and function perspectives - BMC Artificial Intelligence
Noncoding RNAs (ncRNAs) form the major part of the expressed transcriptome. These are critical in regulating gene expression and contributing to disease mechanisms, primarily through their complex sec...
link.springer.com
October 14, 2025 at 9:18 PM
Our latest review explores how RNA foundation models are reshaping predictions of ncRNA structure & function.
We highlight key architectures, training strategies, and open challenges to guide the next phase of RNA-AI research.
Read here 👉 link.springer.com/article/10.1...
We highlight key architectures, training strategies, and open challenges to guide the next phase of RNA-AI research.
Read here 👉 link.springer.com/article/10.1...
Reposted
Our latest paper combines multi-omics integration with genome-scale NLP models trained on DNA to uncover how S. aureus regulates infection, metabolism, and antibiotic resistance.
This unique organism agnostic method offers a new lens for systems-level biology.
🔗 www.nature.com/articles/s41...
This unique organism agnostic method offers a new lens for systems-level biology.
🔗 www.nature.com/articles/s41...
Understanding the regulatory grammar of sepsis-causing Staphylococcus aureus bacteria using contexualised DNA language models - Scientific Reports
Scientific Reports - Understanding the regulatory grammar of sepsis-causing Staphylococcus aureus bacteria using contexualised DNA language models
www.nature.com
October 14, 2025 at 9:11 PM
Our latest paper combines multi-omics integration with genome-scale NLP models trained on DNA to uncover how S. aureus regulates infection, metabolism, and antibiotic resistance.
This unique organism agnostic method offers a new lens for systems-level biology.
🔗 www.nature.com/articles/s41...
This unique organism agnostic method offers a new lens for systems-level biology.
🔗 www.nature.com/articles/s41...
Reposted
New publication from the lab
Our latest paper combines multi-omics integration with genome-scale NLP models trained on DNA to uncover how S. aureus regulates infection, metabolism, and antibiotic resistance.
This unique organism agnostic method offers a new lens for systems-level biology.
🔗 www.nature.com/articles/s41...
This unique organism agnostic method offers a new lens for systems-level biology.
🔗 www.nature.com/articles/s41...
Understanding the regulatory grammar of sepsis-causing Staphylococcus aureus bacteria using contexualised DNA language models - Scientific Reports
Scientific Reports - Understanding the regulatory grammar of sepsis-causing Staphylococcus aureus bacteria using contexualised DNA language models
www.nature.com
October 14, 2025 at 9:13 PM
New publication from the lab
Reposted
Our invited editorial in BMC Artificial Intelligence along with @naimavahab.bsky.social
Our latest review explores how RNA foundation models are reshaping predictions of ncRNA structure & function.
We highlight key architectures, training strategies, and open challenges to guide the next phase of RNA-AI research.
Read here 👉 link.springer.com/article/10.1...
We highlight key architectures, training strategies, and open challenges to guide the next phase of RNA-AI research.
Read here 👉 link.springer.com/article/10.1...
Advancing non-coding RNA annotation with RNA sequence foundation models: structure and function perspectives - BMC Artificial Intelligence
Noncoding RNAs (ncRNAs) form the major part of the expressed transcriptome. These are critical in regulating gene expression and contributing to disease mechanisms, primarily through their complex sec...
link.springer.com
October 14, 2025 at 9:45 PM
Our invited editorial in BMC Artificial Intelligence along with @naimavahab.bsky.social
Reposted
#hotoffthepress #newpublication from the #TyagiLab
"EHR-ML: A Data-Driven Framework for Designing Machine Learning Applications with Electronic Health Records “
Pre-proof is online now: lnkd.in/gHHrFEGF
"EHR-ML: A Data-Driven Framework for Designing Machine Learning Applications with Electronic Health Records “
Pre-proof is online now: lnkd.in/gHHrFEGF
LinkedIn
This link will take you to a page that’s not on LinkedIn
lnkd.in
January 31, 2025 at 2:27 AM
#hotoffthepress #newpublication from the #TyagiLab
"EHR-ML: A Data-Driven Framework for Designing Machine Learning Applications with Electronic Health Records “
Pre-proof is online now: lnkd.in/gHHrFEGF
"EHR-ML: A Data-Driven Framework for Designing Machine Learning Applications with Electronic Health Records “
Pre-proof is online now: lnkd.in/gHHrFEGF
Reposted
Good work by @aashishbhandari.com
#digitalhealth #missingdata #machinelearning #predictivemodeling #AIforHealth
#digitalhealth #missingdata #machinelearning #predictivemodeling #AIforHealth
March 18, 2025 at 1:45 AM
Reposted
New publication from the lab @tyagilab.bsky.social
Applications of linguistics in genome language modeling
academic.oup.com/biomethods/a...
Applications of linguistics in genome language modeling
academic.oup.com/biomethods/a...
Genome language modeling (GLM): a beginner’s cheat sheet
Abstract. Integrating genomics with diverse data modalities has the potential to revolutionize personalized medicine. However, this integration poses signi
academic.oup.com
May 12, 2025 at 1:06 AM
New publication from the lab @tyagilab.bsky.social
Applications of linguistics in genome language modeling
academic.oup.com/biomethods/a...
Applications of linguistics in genome language modeling
academic.oup.com/biomethods/a...
Reposted
New publication from the lab @tyagilab.bsky.social academic.oup.com/biomethods/a...
#multimidaldata #biomedicaldata #dataharmonisation #tyagilab
#multimidaldata #biomedicaldata #dataharmonisation #tyagilab
Navigating the Multiverse: a Hitchhiker’s guide to selecting harmonization methods for multimodal biomedical data
Abstract. The application of machine learning (ML) techniques in predictive modelling has greatly advanced our comprehension of biological systems. There i
academic.oup.com
May 4, 2025 at 7:50 PM
New publication from the lab @tyagilab.bsky.social academic.oup.com/biomethods/a...
#multimidaldata #biomedicaldata #dataharmonisation #tyagilab
#multimidaldata #biomedicaldata #dataharmonisation #tyagilab
Reposted
Semantic Encoding in Medical LLMs for Vocabulary Standardisation https://www.medrxiv.org/content/10.1101/2025.06.16.25329716v1
June 18, 2025 at 4:30 AM
Reposted
#Interpretable vs #explainable #AI
📖 An informative post by lab members @esha4.bsky.social and @tnavya.bsky.social 📖
📖 An informative post by lab members @esha4.bsky.social and @tnavya.bsky.social 📖
New Blog: Interpretability vs Explainability in ML
Why understanding model decisions matters for ethical AI.
👉 aiineverything.blogspot.com/2025/07/mach...
With @tyagilab.bsky.social, A/Prof. Sonika Tyagi & Navya Tyagi
#XAI #AIethics #ML #TyagiLab
Why understanding model decisions matters for ethical AI.
👉 aiineverything.blogspot.com/2025/07/mach...
With @tyagilab.bsky.social, A/Prof. Sonika Tyagi & Navya Tyagi
#XAI #AIethics #ML #TyagiLab
July 11, 2025 at 11:33 PM
#Interpretable vs #explainable #AI
📖 An informative post by lab members @esha4.bsky.social and @tnavya.bsky.social 📖
📖 An informative post by lab members @esha4.bsky.social and @tnavya.bsky.social 📖
Reposted
Discussing 4 approaches to defining #AI
"Understanding these four perspectives i.e. acting humanly, thinking humanly, thinking rationally, and acting rationally, gives us a framework to appreciate the richness and diversity of AI."
aiineverything.blogspot.com/2025/07/four...
@tyagilab.bsky.social
"Understanding these four perspectives i.e. acting humanly, thinking humanly, thinking rationally, and acting rationally, gives us a framework to appreciate the richness and diversity of AI."
aiineverything.blogspot.com/2025/07/four...
@tyagilab.bsky.social
aiineverything.blogspot.com
July 21, 2025 at 11:28 PM
Reposted
September 24, 2025 at 7:26 AM
Reposted
🩺 Missing medical data isn't just something to fill in or ignore!
EHRs often have missing values. Common fix? Imputation. But filling gaps can mislead predictions.
We explore ML approaches to handle missingness while preserving the original data distribution.
📜 www.researchsquare.com/article/rs-6...
EHRs often have missing values. Common fix? Imputation. But filling gaps can mislead predictions.
We explore ML approaches to handle missingness while preserving the original data distribution.
📜 www.researchsquare.com/article/rs-6...
Mind the Gaps: Guess Less, Predict More with Missing Medical Data
Healthcare data, generally available as electronic health records (EHR), provide a rich profile of an individual’s health and lifestyle. This data can be harnessed for predictive modelling using machi...
www.researchsquare.com
September 25, 2025 at 1:33 AM
🩺 Missing medical data isn't just something to fill in or ignore!
EHRs often have missing values. Common fix? Imputation. But filling gaps can mislead predictions.
We explore ML approaches to handle missingness while preserving the original data distribution.
📜 www.researchsquare.com/article/rs-6...
EHRs often have missing values. Common fix? Imputation. But filling gaps can mislead predictions.
We explore ML approaches to handle missingness while preserving the original data distribution.
📜 www.researchsquare.com/article/rs-6...
A versatile machine learning pipeline to find co-regulatory modules (CRMs) in DNA.
Check it out and explore: doi.org/10.1016/j.co...
#Genomics #Epigenomics #MachineLearning #CardiacResearch #OpenScience
@tyagilab.bsky.social @tsonika.bsky.social
Check it out and explore: doi.org/10.1016/j.co...
#Genomics #Epigenomics #MachineLearning #CardiacResearch #OpenScience
@tyagilab.bsky.social @tsonika.bsky.social
September 25, 2025 at 4:22 AM
A versatile machine learning pipeline to find co-regulatory modules (CRMs) in DNA.
Check it out and explore: doi.org/10.1016/j.co...
#Genomics #Epigenomics #MachineLearning #CardiacResearch #OpenScience
@tyagilab.bsky.social @tsonika.bsky.social
Check it out and explore: doi.org/10.1016/j.co...
#Genomics #Epigenomics #MachineLearning #CardiacResearch #OpenScience
@tyagilab.bsky.social @tsonika.bsky.social