MyST Markdown
@mystmd.org
Markdown with superpowers for writing scientific 👨🔬 and technical 📈papers. #OpenSource & maintained by Project #Jupyter.
Reposted by MyST Markdown
I (and we @mystmd.org) have been working on releasing new version of the MyST Markdown AST. A foundational change to the representation of Jupyter outputs that sets up a lot of future possibilities - notes and thoughts are here: opensci.dev/articles/on-...
On the MyST Markdown V3 AST - opensci.dev
A post exploring the new MyST Markdown V3 AST and the changes it brings to the MyST Markdown stack.
opensci.dev
December 17, 2025 at 8:50 AM
I (and we @mystmd.org) have been working on releasing new version of the MyST Markdown AST. A foundational change to the representation of Jupyter outputs that sets up a lot of future possibilities - notes and thoughts are here: opensci.dev/articles/on-...
The Jupyter Book team has been working hard on a big foundational improvement to how notebook outputs are represented in MyST documents. Steve writes about this change and what it means in this post:
blog.jupyterbook.org/posts/2025-1...
blog.jupyterbook.org/posts/2025-1...
Jupyter Book V3 AST: Better Output Handling and Future Possibilities - Jupyter Book: Blog
Updates from the Jupyter Book subproject.
blog.jupyterbook.org
December 17, 2025 at 6:19 PM
The Jupyter Book team has been working hard on a big foundational improvement to how notebook outputs are represented in MyST documents. Steve writes about this change and what it means in this post:
blog.jupyterbook.org/posts/2025-1...
blog.jupyterbook.org/posts/2025-1...
Reposted by MyST Markdown
We've just moved our `any-widget` based directives and renders for @mystmd.org into a public repo on @curvenote.com . After quite a while tinkering these are nicely supporting interactive visualizations - more work to fully implement the full `any-widget` interface coming
github.com/curvenote/cu...
github.com/curvenote/cu...
curvenote/packages/any-widget at main · curvenote/curvenote
Create, edit, share, and publish scientific and technical documents. - curvenote/curvenote
github.com
December 2, 2025 at 9:41 AM
We've just moved our `any-widget` based directives and renders for @mystmd.org into a public repo on @curvenote.com . After quite a while tinkering these are nicely supporting interactive visualizations - more work to fully implement the full `any-widget` interface coming
github.com/curvenote/cu...
github.com/curvenote/cu...
The Jupyter Book gallery is back! Now with the MyST Engine under the hood! Thanks to @FreekPols for contributing it.
jupyterbook.org/latest/galle...
jupyterbook.org/latest/galle...
🖼️ Gallery of Jupyter Books - Jupyter Book
Jupyter Book technology has been applied across a wide range of use cases, including curricula vitae, official educational textbooks, student portfolios, lab manuals, and technical documentation.…
jupyterbook.org
November 21, 2025 at 6:39 PM
The Jupyter Book gallery is back! Now with the MyST Engine under the hood! Thanks to @FreekPols for contributing it.
jupyterbook.org/latest/galle...
jupyterbook.org/latest/galle...
We recently pushed Jupyter Book 2, which was a breaking change for many of our users! We considered publishing a completely different package (e.g., `jupyter-book2`) but decided against it. Here's a quick rationale why:
Why we made a major release for Jupyter Book 2 instead of creating a new package - Jupyter Book: Blog
Updates from the Jupyter Book subproject.
blog.jupyterbook.org
November 7, 2025 at 6:16 PM
We recently pushed Jupyter Book 2, which was a breaking change for many of our users! We considered publishing a completely different package (e.g., `jupyter-book2`) but decided against it. Here's a quick rationale why:
JupyterBook 2 is released! This is now built on top of the @mystmd.org engine directly.
🚀
Please reach out on our GitHub discussions if you have any problems upgrading.
🚀
Please reach out on our GitHub discussions if you have any problems upgrading.
November 3, 2025 at 2:31 PM
JupyterBook 2 is released! This is now built on top of the @mystmd.org engine directly.
🚀
Please reach out on our GitHub discussions if you have any problems upgrading.
🚀
Please reach out on our GitHub discussions if you have any problems upgrading.
Reposted by MyST Markdown
🚀 Exciting news! The SciPy 2025 Proceedings are officially published:
👉 proceedings.scipy.org/2025
Huge thanks to the Proceedings Committee, @curvenote.com, Jim Weiss, all the authors, and reviewers who made this happen. 🙌
👉 proceedings.scipy.org/2025
Huge thanks to the Proceedings Committee, @curvenote.com, Jim Weiss, all the authors, and reviewers who made this happen. 🙌
Proceedings of SciPy 2025 - SciPy Proceedings
Proceedings of the Python in Science Conferences
proceedings.scipy.org
October 29, 2025 at 5:26 PM
🚀 Exciting news! The SciPy 2025 Proceedings are officially published:
👉 proceedings.scipy.org/2025
Huge thanks to the Proceedings Committee, @curvenote.com, Jim Weiss, all the authors, and reviewers who made this happen. 🙌
👉 proceedings.scipy.org/2025
Huge thanks to the Proceedings Committee, @curvenote.com, Jim Weiss, all the authors, and reviewers who made this happen. 🙌
Reposted by MyST Markdown
@creativecommons.bsky.social and @continuous.foundation are teaming up to make reuse the default for modular science.
Join the cohort working to shape incentives for reuse in modular science. The group will kick off in January 2026.
Apply by Sunday, Nov 30
continuousfoundation.org/reuse-form
Join the cohort working to shape incentives for reuse in modular science. The group will kick off in January 2026.
Apply by Sunday, Nov 30
continuousfoundation.org/reuse-form
October 28, 2025 at 8:03 PM
@creativecommons.bsky.social and @continuous.foundation are teaming up to make reuse the default for modular science.
Join the cohort working to shape incentives for reuse in modular science. The group will kick off in January 2026.
Apply by Sunday, Nov 30
continuousfoundation.org/reuse-form
Join the cohort working to shape incentives for reuse in modular science. The group will kick off in January 2026.
Apply by Sunday, Nov 30
continuousfoundation.org/reuse-form
🚨 New paper! The @jupyterbook.org team just published a peer-reviewed paper in the SciPy Proceedings describing the design & architecture of Jupyter Book 2 and the MyST Document Engine!
📝 blog post: blog.jupyterbook.org/posts/2025-j...
📄 paper: proceedings.scipy.org/articles/hwc...
📝 blog post: blog.jupyterbook.org/posts/2025-j...
📄 paper: proceedings.scipy.org/articles/hwc...
Jupyter Book 2 and the MyST Document Stack - SciPy Proceedings
Jupyter Book allows researchers and educators to create books and knowledge bases that are reusable, reproducible, and interactive. This new foundation introduces a scalable way to publish…
proceedings.scipy.org
October 22, 2025 at 2:06 PM
🚨 New paper! The @jupyterbook.org team just published a peer-reviewed paper in the SciPy Proceedings describing the design & architecture of Jupyter Book 2 and the MyST Document Engine!
📝 blog post: blog.jupyterbook.org/posts/2025-j...
📄 paper: proceedings.scipy.org/articles/hwc...
📝 blog post: blog.jupyterbook.org/posts/2025-j...
📄 paper: proceedings.scipy.org/articles/hwc...
Reposted by MyST Markdown
@mystmd.org 1.5 is out, along with an updated web theme!
github.com/jupyter-book...
github.com/jupyter-book...
Improved site footers, hidden entries and external URLs in table of contents, better UI for in-browser execution plus improved docs and bug-fixes.
github.com/jupyter-book...
github.com/jupyter-book...
Improved site footers, hidden entries and external URLs in table of contents, better UI for in-browser execution plus improved docs and bug-fixes.
Release mystmd@1.5.0 · jupyter-book/mystmd
(full changelog)
Enhancements made
🗾 HTML Image Width #2111 (@rowanc1, @changeset-bot)
👽 Handle external URL specified in TOC #2102 (@stefanv, @fwkoch, @choldgraf, @mfisher87, @rowanc1, @changeset...
github.com
June 24, 2025 at 10:33 PM
@mystmd.org 1.5 is out, along with an updated web theme!
github.com/jupyter-book...
github.com/jupyter-book...
Improved site footers, hidden entries and external URLs in table of contents, better UI for in-browser execution plus improved docs and bug-fixes.
github.com/jupyter-book...
github.com/jupyter-book...
Improved site footers, hidden entries and external URLs in table of contents, better UI for in-browser execution plus improved docs and bug-fixes.
Reposted by MyST Markdown
Release notes from the 1.4 release of @mystmd.org - the team made a bunch of improvements on social media links, plugin functionality, and documentation for contributors and developers!
github.com/jupyter-book...
github.com/jupyter-book...
Release mystmd v1.4.0 · jupyter-book/mystmd
(full changelog)
Enhancements made
💬 Add social media project frontmatter #2021 (@kne42, @agoose77, @fwkoch, @rowanc1, @choldgraf, @artoftheblue)
Complete ipynb export support #1915 (@kp992, @agoo...
github.com
June 13, 2025 at 1:49 PM
Release notes from the 1.4 release of @mystmd.org - the team made a bunch of improvements on social media links, plugin functionality, and documentation for contributors and developers!
github.com/jupyter-book...
github.com/jupyter-book...
Reposted by MyST Markdown
A Jupyter Book team goal over the past months has been improving the documentation for users and contributors in the @mystmd.org project. I wanted to share two important pages with big updates!
A conceptual overview of MyST: mystmd.org/guide/overview
Our developer guide: mystmd.org/guide/develo...
A conceptual overview of MyST: mystmd.org/guide/overview
Our developer guide: mystmd.org/guide/develo...
Overview of the MyST stack - MyST Markdown
mystmd.org
May 25, 2025 at 2:26 PM
A Jupyter Book team goal over the past months has been improving the documentation for users and contributors in the @mystmd.org project. I wanted to share two important pages with big updates!
A conceptual overview of MyST: mystmd.org/guide/overview
Our developer guide: mystmd.org/guide/develo...
A conceptual overview of MyST: mystmd.org/guide/overview
Our developer guide: mystmd.org/guide/develo...
Reposted by MyST Markdown
The @mystmd.org theme now has support for "page edit" buttons! These take you directly to the source page in GitHub so that you can quickly make an edit. They are so useful! Many thanks to Kira for getting this in with her first contribution to the MyST Theme!
github.com/jupyter-book...
github.com/jupyter-book...
✍️ Feat: add edit button by kne42 · Pull Request #577 · jupyter-book/myst-theme
Adds an edit button to pages that have GitHub repo information to edit the corresponding page on the site.
closes #326
github.com
May 13, 2025 at 8:47 PM
The @mystmd.org theme now has support for "page edit" buttons! These take you directly to the source page in GitHub so that you can quickly make an edit. They are so useful! Many thanks to Kira for getting this in with her first contribution to the MyST Theme!
github.com/jupyter-book...
github.com/jupyter-book...
Reposted by MyST Markdown
Thanks to Stefan for a big-ish improvement to the contributing and developer documentation docs. This kind of thing is critical for growing an open source project like @mystmd.org and it's really hard to write when you've been working on it for a long time!
github.com/jupyter-book...
github.com/jupyter-book...
Restructure developer guide and add architecture overview by stefanv · Pull Request #1906 · jupyter-book/mystmd
Hi folks 👋!
I'm a developer from the Scientific Python ecosystem, who is new to mystmd, but who has some experience in building documentation tools. Such as the original SciPy Proceedings machi...
github.com
April 27, 2025 at 2:48 PM
Thanks to Stefan for a big-ish improvement to the contributing and developer documentation docs. This kind of thing is critical for growing an open source project like @mystmd.org and it's really hard to write when you've been working on it for a long time!
github.com/jupyter-book...
github.com/jupyter-book...
Reposted by MyST Markdown
A @mystmd.org appreciation moment: making presentations with notebooks is SO much easier! I presented today with slides + notebooks on intake-esgf/intake-esm, with materials available on this website
mgrover1.github.io/esds-intake-...
mgrover1.github.io/esds-intake-...
ESDS Presentation: Overview of intake-esm and intake-esgf - intake-esm vs. intake-esgf ESDS Presentation
Github Pages based template for hackathons
mgrover1.github.io
April 28, 2025 at 8:40 PM
A @mystmd.org appreciation moment: making presentations with notebooks is SO much easier! I presented today with slides + notebooks on intake-esgf/intake-esm, with materials available on this website
mgrover1.github.io/esds-intake-...
mgrover1.github.io/esds-intake-...
Reposted by MyST Markdown
🚀 You can now explore an analysis inside of a scientific paper!
@row1.ca shows you how to connect data, software, and story into interactive, dynamic publications using @mystmd.org
📺 Watch now -> youtu.be/zrwt0PX5mdM?...
#OpenScience #Reproducibility #science #opensource
@row1.ca shows you how to connect data, software, and story into interactive, dynamic publications using @mystmd.org
📺 Watch now -> youtu.be/zrwt0PX5mdM?...
#OpenScience #Reproducibility #science #opensource
March 17, 2025 at 8:15 PM
🚀 You can now explore an analysis inside of a scientific paper!
@row1.ca shows you how to connect data, software, and story into interactive, dynamic publications using @mystmd.org
📺 Watch now -> youtu.be/zrwt0PX5mdM?...
#OpenScience #Reproducibility #science #opensource
@row1.ca shows you how to connect data, software, and story into interactive, dynamic publications using @mystmd.org
📺 Watch now -> youtu.be/zrwt0PX5mdM?...
#OpenScience #Reproducibility #science #opensource
Reposted by MyST Markdown
Wohoo we can define custom CSS stylesheets with @mystmd.org github.com/jupyter-book... (in the next release)
💇 Add support for user stylesheets by agoose77 · Pull Request #540 · jupyter-book/myst-theme
Fixes #321 by pulling in a user-defined stylesheet.
Integrating Tailwind
In #321, there is a brief discussion about the benefits of being able to use Tailwind. Integrating a pre-processor poses a c...
github.com
February 27, 2025 at 4:59 PM
Wohoo we can define custom CSS stylesheets with @mystmd.org github.com/jupyter-book... (in the next release)
Excited to see the @turingway.bsky.social move to Jupyter v2, which is powered by mystmd.org.
Check it out:
book.the-turing-way.org
Especially the glossary:
book.the-turing-way.org/afterword/gl...
Check it out:
book.the-turing-way.org
Especially the glossary:
book.the-turing-way.org/afterword/gl...
February 19, 2025 at 11:05 AM
Excited to see the @turingway.bsky.social move to Jupyter v2, which is powered by mystmd.org.
Check it out:
book.the-turing-way.org
Especially the glossary:
book.the-turing-way.org/afterword/gl...
Check it out:
book.the-turing-way.org
Especially the glossary:
book.the-turing-way.org/afterword/gl...
Reposted by MyST Markdown
Hey there 🦋🧪, we're a new open access microscopy journal and wanted to introduce ourselves! EM aims to modernize scientific publishing for microscopy, by prioritizing open science, transparency, and accessibility and using open-source formats and interactive notebooks 🙌
@curvenote.com @mystmd.org 🚀
@curvenote.com @mystmd.org 🚀
February 2, 2025 at 11:04 AM
Hey there 🦋🧪, we're a new open access microscopy journal and wanted to introduce ourselves! EM aims to modernize scientific publishing for microscopy, by prioritizing open science, transparency, and accessibility and using open-source formats and interactive notebooks 🙌
@curvenote.com @mystmd.org 🚀
@curvenote.com @mystmd.org 🚀
Reposted by MyST Markdown
New MyST proposal! It's for a short-hand way to add classes/options/labels to roles and directives. Read and comment here: github.com/jupyter-book...
This will unlock a lot of functionality for extending roles in particular, I'm really excited about it!
(led by @row1.ca and @agoose77.bsky.social)
This will unlock a lot of functionality for extending roles in particular, I'm really excited about it!
(led by @row1.ca and @agoose77.bsky.social)
Inline Options for Roles and Directives by agoose77 · Pull Request #28 · jupyter-book/myst-enhancement-proposals
This is a WIP draft for adding "inline attributes" to MyST.
Spec Issue: jupyter-book/myst-spec#68
github.com
January 29, 2025 at 6:09 PM
New MyST proposal! It's for a short-hand way to add classes/options/labels to roles and directives. Read and comment here: github.com/jupyter-book...
This will unlock a lot of functionality for extending roles in particular, I'm really excited about it!
(led by @row1.ca and @agoose77.bsky.social)
This will unlock a lot of functionality for extending roles in particular, I'm really excited about it!
(led by @row1.ca and @agoose77.bsky.social)
Reposted by MyST Markdown
Woo! @mystmd.org can now hide inputs/outputs of jupyter notebook cells via tags! Thanks @row1.ca for the contribution!
github.com/jupyter-book...
github.com/jupyter-book...
🙈 Hide Content based on tags by rowanc1 · Pull Request #517 · jupyter-book/myst-theme
Very very simple UI to get this feature possible:
I am reusing the Dropdown.
I am going to push this functionality over the line and then we can refine the UI.
Fixes #50
Fixes jupyter-book/mystmd#...
github.com
January 9, 2025 at 11:40 PM
Woo! @mystmd.org can now hide inputs/outputs of jupyter notebook cells via tags! Thanks @row1.ca for the contribution!
github.com/jupyter-book...
github.com/jupyter-book...
Reposted by MyST Markdown
Still science in 2024: "Our figure 2 shows this result clearly. Please scroll down 30 PAGES to see it..."
PS with @curvenote.com journals, inline figures can go full-width, and any reference to a figure shows it in a hover popup.
PS with @curvenote.com journals, inline figures can go full-width, and any reference to a figure shows it in a hover popup.
January 8, 2025 at 5:07 AM
Still science in 2024: "Our figure 2 shows this result clearly. Please scroll down 30 PAGES to see it..."
PS with @curvenote.com journals, inline figures can go full-width, and any reference to a figure shows it in a hover popup.
PS with @curvenote.com journals, inline figures can go full-width, and any reference to a figure shows it in a hover popup.
Reposted by MyST Markdown
Great job by @row1.ca at the #AGU24 #OpenScience pavillion, discussing @mystmd.org and the future of scientific publishing
December 9, 2024 at 8:26 PM
Great job by @row1.ca at the #AGU24 #OpenScience pavillion, discussing @mystmd.org and the future of scientific publishing
Reposted by MyST Markdown
At #AGU24? Interested in #OpenScience and reproducible pucñications with @projectjupyter.bsky.social @mystmd.org and @agu?
Join us today at 6pm in Salon G for the Notebooks Now! Town Hall!
agu.confex.com/agu/agu24/me...
Join us today at 6pm in Salon G for the Notebooks Now! Town Hall!
agu.confex.com/agu/agu24/me...
Notebooks Now! What’s Next for the Computational Notebook Submission Format at AGU
Computational notebooks created using Jupyter and R Markdown, among other resources, fuse research narratives with code and data. At AGU, we are launching a new manuscript format using the computation...
agu.confex.com
December 11, 2024 at 8:45 PM
At #AGU24? Interested in #OpenScience and reproducible pucñications with @projectjupyter.bsky.social @mystmd.org and @agu?
Join us today at 6pm in Salon G for the Notebooks Now! Town Hall!
agu.confex.com/agu/agu24/me...
Join us today at 6pm in Salon G for the Notebooks Now! Town Hall!
agu.confex.com/agu/agu24/me...
Reposted by MyST Markdown
If you're at #AGU24, join us to see @row1.ca discuss some of the recent progress happening in the @mystmd.org @projectjupyter.bsky.social ecosystem!
@stevejpurves.bsky.social and I will be there and would love to connect!
@stevejpurves.bsky.social and I will be there and would love to connect!
Monday 9th 15:00 Open Science Pavilion - Big Screen, Exhibit Hall
Join @row1.ca for a session on Publishing Computational Research Session
#OpenScience #Jupyter @mystmd.org
Join @row1.ca for a session on Publishing Computational Research Session
#OpenScience #Jupyter @mystmd.org
December 8, 2024 at 2:15 PM
If you're at #AGU24, join us to see @row1.ca discuss some of the recent progress happening in the @mystmd.org @projectjupyter.bsky.social ecosystem!
@stevejpurves.bsky.social and I will be there and would love to connect!
@stevejpurves.bsky.social and I will be there and would love to connect!