Moon
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masayukinagai.bsky.social
Moon
@masayukinagai.bsky.social
PhD student @ Koo lab, CSHL | Computational Biology | AI Alignment
Reposted by Moon
Exciting symposium on AI and Biology at EMBO | EMBL in Heidelberg on 10-13 March 2026!

Excellent lineup of invited speakers across various scales of biology!

Deadline for abstract submission is coming up — Dec 2.

🔗 www.embl.org/about/info/c...

#EESAIBio @EMBLEvents
November 7, 2025 at 12:16 AM
Multiple sequence alignments (MSAs) for protein sequences on GPU!
MMseqs2-GPU is available as a downloadable NVIDIA NIM microservice (MSA-Search)!
June 13, 2025 at 6:08 PM
“You will never be completely at home again, because part of your heart always will be elsewhere.
That is the price you pay for the richness of loving and knowing people in more than one place.” Miriam Adeney
June 8, 2025 at 8:40 PM
Short article to call for built-in biosecurity safeguards in generative AI. We need to beware of dual-use risks to fully enjoy the benefits of the technology!
www.nature.com/articles/s41...

#biosecurity #aisafety
A call for built-in biosecurity safeguards for generative AI tools - Nature Biotechnology
Nature Biotechnology - A call for built-in biosecurity safeguards for generative AI tools
www.nature.com
May 5, 2025 at 1:53 PM
Reposted by Moon
To the top of the "to-read" list. Looks like a heroic amount of work from the Hahn lab (large-scale ChEC-seq compendium!) www.nature.com/articles/s41...
Low overlap of transcription factor DNA binding and regulatory targets - Nature
A near-complete survey of transcription factor activities in Saccharomyces cerevisiae reveals that most transcription factors have both activator and repressor activities and limited overlap between t...
www.nature.com
April 16, 2025 at 4:04 PM
This preprint highlights a key limitation in sequence-to-function models: while most focus on SNP effects, small indels are also common and often introduce technical variance by shifting pooling/output boundaries. Two inference-time augmentation strategies are proposed to address the issue. 1/2
April 14, 2025 at 7:17 PM
Reposted by Moon
[SAVE THE DATE] MLCB 2025 is happening Sept 10-11 at the NY Genome Center in NYC!

Attend the premier conference at the intersection of ML & Bio, share your research and make lasting connections!

Submission deadline: June 1
More details: mlcb.github.io

Help spread the word—please RT! #MLCB2025
February 5, 2025 at 2:50 AM