Li Shen
@lishenlc.bsky.social
Penn Professor of Informatics and Radiology
Reposted by Li Shen
Three weeks to go!⏳Register for the Immune Health Hackathon (Nov. 20–21). Join the Penn community for 48 hours of collaboration and discovery as teams tackle real-world challenges in immunology research. Don’t miss it—register today: i3hevents.org
October 31, 2025 at 5:14 PM
Three weeks to go!⏳Register for the Immune Health Hackathon (Nov. 20–21). Join the Penn community for 48 hours of collaboration and discovery as teams tackle real-world challenges in immunology research. Don’t miss it—register today: i3hevents.org
Reposted by Li Shen
Have you registered for the Immune Health Hackathon (Nov. 20-21)? Over the course of 48 hours, participants will work in interdisciplinary teams to tackle pressing challenges in immunology research to win cash prizes. Open to all members of the Penn community. Learn more and register: i3hevents.org
October 22, 2025 at 3:18 PM
Have you registered for the Immune Health Hackathon (Nov. 20-21)? Over the course of 48 hours, participants will work in interdisciplinary teams to tackle pressing challenges in immunology research to win cash prizes. Open to all members of the Penn community. Learn more and register: i3hevents.org
Big congratulations to Sophie Kearney, Shu Yang and co-authors for winning the SIGBio Best Paper Award at ACM BCB 2025!!! @upenngcb.bsky.social @dbei-upenn.bsky.social @pennaitech.bsky.social
October 15, 2025 at 12:17 AM
Big congratulations to Sophie Kearney, Shu Yang and co-authors for winning the SIGBio Best Paper Award at ACM BCB 2025!!! @upenngcb.bsky.social @dbei-upenn.bsky.social @pennaitech.bsky.social
Reposted by Li Shen
Our webinar series continues this Fall with another line-up of global experts isuch as Pamela Toto, Danielle Mowery, Sudeshna Sil Kar, Bo Xie, Nathan Price, Zhi Huang, Michael Cary, Mia Tackney, Paul Barr and Bárbara Barbosa Neves.
To register:
upenn.zoom.us/webinar/regi...
To register:
upenn.zoom.us/webinar/regi...
September 2, 2025 at 6:45 PM
Our webinar series continues this Fall with another line-up of global experts isuch as Pamela Toto, Danielle Mowery, Sudeshna Sil Kar, Bo Xie, Nathan Price, Zhi Huang, Michael Cary, Mia Tackney, Paul Barr and Bárbara Barbosa Neves.
To register:
upenn.zoom.us/webinar/regi...
To register:
upenn.zoom.us/webinar/regi...
Reposted by Li Shen
Summer Innovation Institute Day 2: Dr. Li Shen and members of his lab, Drs Shu Yanh, Tianhua Zhai and Bojian Hou presented a great overview of ways to harness AI and LLMs for Alzheimer's and Aging Studies based on their own impressive research portfolio.
June 24, 2025 at 10:36 PM
Summer Innovation Institute Day 2: Dr. Li Shen and members of his lab, Drs Shu Yanh, Tianhua Zhai and Bojian Hou presented a great overview of ways to harness AI and LLMs for Alzheimer's and Aging Studies based on their own impressive research portfolio.
Reposted by Li Shen
June 5, 2025 at 9:56 AM
Reposted by Li Shen
ft. @Jx_Bao7, @ShizhuoM, @chenjiong111, @manu_shivakumar, Yuhan Cui, @erusguray,
ZhijianYang, @ShuYangPenn, Zixuan Wen, @dokyoon_kim, @DuyDuongTran1, Bingxin Zhao, @chrisdav66, @qilong.bsky.social & @lishenlc.bsky.social @dbei-upenn.bsky.social @pennaitech.bsky.social www.nature.com/articles/s41...
ZhijianYang, @ShuYangPenn, Zixuan Wen, @dokyoon_kim, @DuyDuongTran1, Bingxin Zhao, @chrisdav66, @qilong.bsky.social & @lishenlc.bsky.social @dbei-upenn.bsky.social @pennaitech.bsky.social www.nature.com/articles/s41...
April 30, 2025 at 6:18 PM
ft. @Jx_Bao7, @ShizhuoM, @chenjiong111, @manu_shivakumar, Yuhan Cui, @erusguray,
ZhijianYang, @ShuYangPenn, Zixuan Wen, @dokyoon_kim, @DuyDuongTran1, Bingxin Zhao, @chrisdav66, @qilong.bsky.social & @lishenlc.bsky.social @dbei-upenn.bsky.social @pennaitech.bsky.social www.nature.com/articles/s41...
ZhijianYang, @ShuYangPenn, Zixuan Wen, @dokyoon_kim, @DuyDuongTran1, Bingxin Zhao, @chrisdav66, @qilong.bsky.social & @lishenlc.bsky.social @dbei-upenn.bsky.social @pennaitech.bsky.social www.nature.com/articles/s41...
Excited to share our new @naturecomms.bsky.social paper led by Jingxuan Bao @upenngcb.bsky.social: “A genetically informed brain atlas for enhancing brain imaging genomics‘’ Read it here: www.nature.com/articles/s41.... @qilong.bsky.social @dbei-upenn.bsky.social @pennaitech.bsky.social
A genetically informed brain atlas for enhancing brain imaging genomics - Nature Communications
GIANT, a genetically informed brain atlas, integrates genetic heritability with neuroanatomy. It shows strong neuroanatomical validity and surpasses traditional atlases in discovery power for brain im...
www.nature.com
April 16, 2025 at 12:17 PM
Excited to share our new @naturecomms.bsky.social paper led by Jingxuan Bao @upenngcb.bsky.social: “A genetically informed brain atlas for enhancing brain imaging genomics‘’ Read it here: www.nature.com/articles/s41.... @qilong.bsky.social @dbei-upenn.bsky.social @pennaitech.bsky.social
Congratulations to Joseph Lee, Shu Yang, Tianqi Shang, Weiqing He and all the co-authors for winning two Distinguished Paper Awards @amiainformatics.bsky.social 2025 Informatics Summit! @dbei-upenn.bsky.social ibi.med.upenn.edu/wp-content/u...
ibi.med.upenn.edu
April 16, 2025 at 12:01 PM
Congratulations to Joseph Lee, Shu Yang, Tianqi Shang, Weiqing He and all the co-authors for winning two Distinguished Paper Awards @amiainformatics.bsky.social 2025 Informatics Summit! @dbei-upenn.bsky.social ibi.med.upenn.edu/wp-content/u...
Reposted by Li Shen
ft. J. Chen, M. Ionita, Y. Feng, Y. Lu, P. Orzechowski, S. Garai, K. Hassinger, J. Bao, D. Duong-Tran, J. Wagenaar, M. McKeague, @markmpainter.bsky.social, D. Mathew, A. Pattekar @nualameyer.bsky.social, @ejohnwherry.bsky.social, A. Greenplate & @lishenlc.bsky.social www.nature.com/articles/s41...
March 11, 2025 at 3:33 PM
ft. J. Chen, M. Ionita, Y. Feng, Y. Lu, P. Orzechowski, S. Garai, K. Hassinger, J. Bao, D. Duong-Tran, J. Wagenaar, M. McKeague, @markmpainter.bsky.social, D. Mathew, A. Pattekar @nualameyer.bsky.social, @ejohnwherry.bsky.social, A. Greenplate & @lishenlc.bsky.social www.nature.com/articles/s41...
Excited to share Zexuan Wang’s new paper: “QOT: Quantized Optimal Transport for sample-level distance matrix in single-cell omics‘’ Read it here: academic.oup.com/bib/article/.... @dbei-upenn.bsky.social @jwagenaar.bsky.social
QOT: Quantized Optimal Transport for sample-level distance matrix in single-cell omics
Abstract. Single-cell technologies have enabled the high-dimensional characterization of cell populations at an unprecedented scale. The innate complexity
academic.oup.com
March 2, 2025 at 6:48 PM
Excited to share Zexuan Wang’s new paper: “QOT: Quantized Optimal Transport for sample-level distance matrix in single-cell omics‘’ Read it here: academic.oup.com/bib/article/.... @dbei-upenn.bsky.social @jwagenaar.bsky.social
Excited to share Jiong Chen’s new @naturecomms.bsky.social paper: “Automated cytometric gating with human level performance using bivariate segmentation‘’ Read it here: rdcu.be/d9BMo. @ejohnwherry.bsky.social @dbei-upenn.bsky.social
Automated cytometric gating with human-level performance using bivariate segmentation
Nature Communications - High-throughput cytometry generates complex single-cell data with challenging manual gating process. Here, authors introduce UNITO, a framework that transforms cell...
rdcu.be
February 12, 2025 at 4:35 PM
Excited to share Jiong Chen’s new @naturecomms.bsky.social paper: “Automated cytometric gating with human level performance using bivariate segmentation‘’ Read it here: rdcu.be/d9BMo. @ejohnwherry.bsky.social @dbei-upenn.bsky.social