@kyrakadhim.bsky.social
PhD student in computational neuroscience at Uni Tübingen with @celltypist.bsky.social
Reposted
Excited to share that our paper got accepted @NeurIPS! 🎉
We introduce TRACE, a new contrastive learning method for visualizing multi-trial neural time-series data.
📊 2D visualizations revealing biological patterns
🔍 Automatic artifact detection
🔬 Works for calcium imaging & electrophysiology data
We introduce TRACE, a new contrastive learning method for visualizing multi-trial neural time-series data.
📊 2D visualizations revealing biological patterns
🔍 Automatic artifact detection
🔬 Works for calcium imaging & electrophysiology data
December 3, 2025 at 9:54 AM
Excited to share that our paper got accepted @NeurIPS! 🎉
We introduce TRACE, a new contrastive learning method for visualizing multi-trial neural time-series data.
📊 2D visualizations revealing biological patterns
🔍 Automatic artifact detection
🔬 Works for calcium imaging & electrophysiology data
We introduce TRACE, a new contrastive learning method for visualizing multi-trial neural time-series data.
📊 2D visualizations revealing biological patterns
🔍 Automatic artifact detection
🔬 Works for calcium imaging & electrophysiology data
Excited to present at #NeurIPS this week on my work building biophysical models of the outer retina! If you’re around come check it out or just say hi, poster #2015, Friday 11-2🎉
You can find the full paper here: openreview.net/forum?id=ayj...
In brief🧵:
You can find the full paper here: openreview.net/forum?id=ayj...
In brief🧵:
A data and task-constrained mechanistic model of the mouse outer...
Visual processing starts in the outer retina where photoreceptors transform light into electrochemical signals. These signals are modulated by inhibition from horizontal cells and sent to the inner...
openreview.net
December 3, 2025 at 6:06 AM
Excited to present at #NeurIPS this week on my work building biophysical models of the outer retina! If you’re around come check it out or just say hi, poster #2015, Friday 11-2🎉
You can find the full paper here: openreview.net/forum?id=ayj...
In brief🧵:
You can find the full paper here: openreview.net/forum?id=ayj...
In brief🧵:
Reposted
Our work on training biophysical models with Jaxley is now out in @natmethods.nature.com. Led by @deismic.bsky.social, with @philipp.hertie.ai, @ppjgoncalves.bsky.social & @jakhmack.bsky.social et al.
Paper: www.nature.com/articles/s41...
Paper: www.nature.com/articles/s41...
Jaxley: differentiable simulation enables large-scale training of detailed biophysical models of neural dynamics - Nature Methods
Jaxley is a versatile platform for biophysical modeling in neuroscience. It allows efficiently simulating large-scale biophysical models on CPUs, GPUs and TPUs. Model parameters can be optimized with ...
www.nature.com
November 13, 2025 at 1:08 PM
Our work on training biophysical models with Jaxley is now out in @natmethods.nature.com. Led by @deismic.bsky.social, with @philipp.hertie.ai, @ppjgoncalves.bsky.social & @jakhmack.bsky.social et al.
Paper: www.nature.com/articles/s41...
Paper: www.nature.com/articles/s41...
At the European Retina Meeting and interested in biophysical modeling of the retina? Come stop by my poster (#081) tomorrow!
September 22, 2025 at 9:27 AM
At the European Retina Meeting and interested in biophysical modeling of the retina? Come stop by my poster (#081) tomorrow!
Agreed!
Great start to #CNS2025Florence 🎆
Thank you to everyone for joining our tutorial on Jaxley and DendroTweaks! It was a great pleasure organizing it toghether with @kyrakadhim.bsky.social, @deismic.bsky.social and @spiroschav.bsky.social
Find all tutorial materials here: github.com/r-makarov/cn...
Thank you to everyone for joining our tutorial on Jaxley and DendroTweaks! It was a great pleasure organizing it toghether with @kyrakadhim.bsky.social, @deismic.bsky.social and @spiroschav.bsky.social
Find all tutorial materials here: github.com/r-makarov/cn...
July 7, 2025 at 5:19 PM
Agreed!
So excited for this tutorial! There's still time to submit abstracts for #CNS2025 in Florence😍
We are thrilled to host a tutorial on biophysical modeling with Jaxley & DendroTweaks at #CNS2025! 📍 Florence, July 5 — looking forward to seeing you there! www.cnsorg.org/cns-2025 @cnsorg.bsky.social
February 28, 2025 at 4:39 PM
So excited for this tutorial! There's still time to submit abstracts for #CNS2025 in Florence😍