joaomics
@joaomics.bsky.social
Reposted by joaomics
Join us!
Check all the new opportunities we have available.
For more information check the link 👉 gimm.pt/jobs/
Check all the new opportunities we have available.
For more information check the link 👉 gimm.pt/jobs/
April 22, 2025 at 9:32 AM
Join us!
Check all the new opportunities we have available.
For more information check the link 👉 gimm.pt/jobs/
Check all the new opportunities we have available.
For more information check the link 👉 gimm.pt/jobs/
www.nature.com/articles/s41...
20 years!
20 years!
Unravelling viral ecology and evolution over 20 years in a freshwater lake - Nature Microbiology
A long-term metagenomic time series reveals how viruses impact diversity, ecological dynamics and evolution of freshwater microbiomes.
www.nature.com
January 18, 2025 at 6:11 PM
www.nature.com/articles/s41...
20 years!
20 years!
bmcgenomics.biomedcentral.com/articles/10.... HT Smart-seq3
Single-cell sequencing of full-length transcripts and T-cell receptors with automated high-throughput Smart-seq3 - BMC Genomics
We developed an automated high-throughput Smart-seq3 (HT Smart-seq3) workflow that integrates best practices and an optimized protocol to enhance efficiency, scalability, and method reproducibility. T...
bmcgenomics.biomedcentral.com
November 24, 2024 at 12:28 PM
bmcgenomics.biomedcentral.com/articles/10.... HT Smart-seq3
November 15, 2024 at 1:55 PM
Massively parallel single-cell sequencing of diverse microbial populations
Massively parallel single-cell sequencing of diverse microbial populations - Nature Methods
DoTA-seq leverages a microfluidic droplet system to isolate and lyse diverse microbes and amplify target genetic loci, enabling high-throughput single-cell sequencing of microbial populations.
www.nature.com
January 24, 2024 at 11:37 AM
Massively parallel single-cell sequencing of diverse microbial populations
Allele-specific mapping!
www.biorxiv.org/content/10.1...
www.biorxiv.org/content/10.1...
STAR+WASP reduces reference bias in the allele-specific mapping of RNA-seq reads
bioRxiv - the preprint server for biology, operated by Cold Spring Harbor Laboratory, a research and educational institution
www.biorxiv.org
January 24, 2024 at 11:00 AM
Allele-specific mapping!
www.biorxiv.org/content/10.1...
www.biorxiv.org/content/10.1...
So cool!
Spatial resolution of host–microbiome interactions - Nature Reviews Genetics
Two papers in Nature Biotechnology report spatial transcriptomic methods for the simultaneous capture of host and microbial genes to study host–microorganism interactions.
www.nature.com
December 18, 2023 at 8:57 AM
So cool!
ONT Dorado accuracy
rrwick.github.io/2023/12/18/o...
rrwick.github.io/2023/12/18/o...
Yet another ONT accuracy test: Dorado v0.5.0
a blog for miscellaneous bioinformatics stuff
rrwick.github.io
December 18, 2023 at 8:55 AM
ONT Dorado accuracy
rrwick.github.io/2023/12/18/o...
rrwick.github.io/2023/12/18/o...