@jenarna.bsky.social
Reposted
📢 Join Us for the Next Viruses in Silico Lecture!
🎙️ SIRIUS and beyond: Turning tandem mass spectra into metabolite structure information
🗓️ 30 October 2025 🕑 4 PM CET
👨🔬 Sebastian Böcker (@uni-jena.de)
📍 Zoom - Register to receive the login details
👉 https://tinyurl.com/VirusesInSilico
🎙️ SIRIUS and beyond: Turning tandem mass spectra into metabolite structure information
🗓️ 30 October 2025 🕑 4 PM CET
👨🔬 Sebastian Böcker (@uni-jena.de)
📍 Zoom - Register to receive the login details
👉 https://tinyurl.com/VirusesInSilico
October 14, 2025 at 8:13 AM
📢 Join Us for the Next Viruses in Silico Lecture!
🎙️ SIRIUS and beyond: Turning tandem mass spectra into metabolite structure information
🗓️ 30 October 2025 🕑 4 PM CET
👨🔬 Sebastian Böcker (@uni-jena.de)
📍 Zoom - Register to receive the login details
👉 https://tinyurl.com/VirusesInSilico
🎙️ SIRIUS and beyond: Turning tandem mass spectra into metabolite structure information
🗓️ 30 October 2025 🕑 4 PM CET
👨🔬 Sebastian Böcker (@uni-jena.de)
📍 Zoom - Register to receive the login details
👉 https://tinyurl.com/VirusesInSilico
Thanks for an inspiring and fruitful @nfdi4microbiota.bsky.social Annual Conference last week 💛
Our team of the #VirJenDB (Noriko, Sharam, Kilian) contributed with a poster💬 and a workshop with demo🤝 about this comprehensive virus sequence database 🦠 🧬 💻 #FAIRdata #metadata #viromics
➡️ virjendb.org
Our team of the #VirJenDB (Noriko, Sharam, Kilian) contributed with a poster💬 and a workshop with demo🤝 about this comprehensive virus sequence database 🦠 🧬 💻 #FAIRdata #metadata #viromics
➡️ virjendb.org
October 6, 2025 at 9:55 PM
Thanks for an inspiring and fruitful @nfdi4microbiota.bsky.social Annual Conference last week 💛
Our team of the #VirJenDB (Noriko, Sharam, Kilian) contributed with a poster💬 and a workshop with demo🤝 about this comprehensive virus sequence database 🦠 🧬 💻 #FAIRdata #metadata #viromics
➡️ virjendb.org
Our team of the #VirJenDB (Noriko, Sharam, Kilian) contributed with a poster💬 and a workshop with demo🤝 about this comprehensive virus sequence database 🦠 🧬 💻 #FAIRdata #metadata #viromics
➡️ virjendb.org
ℹ️ This Wednesday at #DGHM2025 in Jena, Noriko gave a workshop on "Navigating #microbiomes through the lens of NFDI4Microbiota Services"! 🦠💪 #VirJenDB
Glad to have contributed to this year’s program - it was a great opportunity to share insights and exchange with the community!
Glad to have contributed to this year’s program - it was a great opportunity to share insights and exchange with the community!
September 26, 2025 at 5:49 PM
ℹ️ This Wednesday at #DGHM2025 in Jena, Noriko gave a workshop on "Navigating #microbiomes through the lens of NFDI4Microbiota Services"! 🦠💪 #VirJenDB
Glad to have contributed to this year’s program - it was a great opportunity to share insights and exchange with the community!
Glad to have contributed to this year’s program - it was a great opportunity to share insights and exchange with the community!
Big thanks to @linsalrob.bsky.social for a great and inspiring lunch yesterday during his visit to Jena! 🥗🥘🤝
Great conversation, fresh perspectives, and some ideas to take forward. 🧬🖥️🦘
#research #collaboration #bioinformatics
Great conversation, fresh perspectives, and some ideas to take forward. 🧬🖥️🦘
#research #collaboration #bioinformatics
September 26, 2025 at 9:19 AM
Big thanks to @linsalrob.bsky.social for a great and inspiring lunch yesterday during his visit to Jena! 🥗🥘🤝
Great conversation, fresh perspectives, and some ideas to take forward. 🧬🖥️🦘
#research #collaboration #bioinformatics
Great conversation, fresh perspectives, and some ideas to take forward. 🧬🖥️🦘
#research #collaboration #bioinformatics
Daria, Maria, Tom, and Kilian had a great time at the #GCB2025 in Düsseldorf this week, gaining many valuable insights to follow up 💪 and enjoying fruitful discussions about their posters
#MethylationBiomarkers #SugarTool #microsynteny #VirJenDB 🧬🔧🦠 👏
#MethylationBiomarkers #SugarTool #microsynteny #VirJenDB 🧬🔧🦠 👏
September 25, 2025 at 9:11 AM
Daria, Maria, Tom, and Kilian had a great time at the #GCB2025 in Düsseldorf this week, gaining many valuable insights to follow up 💪 and enjoying fruitful discussions about their posters
#MethylationBiomarkers #SugarTool #microsynteny #VirJenDB 🧬🔧🦠 👏
#MethylationBiomarkers #SugarTool #microsynteny #VirJenDB 🧬🔧🦠 👏
👏Alex reported about our work in the Center for Early Pregnancy and Reproductive Health (CEPRE) at the @leibnizfli.bsky.social Seminar on Tuesday - "RNA sequencing and metagenomics for the analysis of patient-derived materials" 🧬 🩺
👉 www.uniklinikum-jena.de/cepre/en/SP+...
👉 www.uniklinikum-jena.de/cepre/en/SP+...
September 25, 2025 at 8:49 AM
👏Alex reported about our work in the Center for Early Pregnancy and Reproductive Health (CEPRE) at the @leibnizfli.bsky.social Seminar on Tuesday - "RNA sequencing and metagenomics for the analysis of patient-derived materials" 🧬 🩺
👉 www.uniklinikum-jena.de/cepre/en/SP+...
👉 www.uniklinikum-jena.de/cepre/en/SP+...
📢 Tomorrow, Manja will speak at the LOEWE Research Cluster CoroPan Symposium about "Full #RNA viral #GenomeAlignments with conserved RNA #SecondaryStructure annotations", excited to discuss latest coronavirus research (besides SARS-CoV-2) and to meet good friends again!
🔗 eveeno.com/internationa...
🔗 eveeno.com/internationa...
LOEWE Research Cluster CoroPan Symposium
International Symposium on Coronavirusues LOEWE Research Cluster CoroPan
eveeno.com
September 23, 2025 at 1:01 PM
📢 Tomorrow, Manja will speak at the LOEWE Research Cluster CoroPan Symposium about "Full #RNA viral #GenomeAlignments with conserved RNA #SecondaryStructure annotations", excited to discuss latest coronavirus research (besides SARS-CoV-2) and to meet good friends again!
🔗 eveeno.com/internationa...
🔗 eveeno.com/internationa...
📢 Part of our group will go to @gcb-bioinformatics.bsky.social next week! Join us at our posters to learn & discuss about:
🧬methylation biomarker detection in cancer research (P032)
🔧the tool sugar (P036) and it's application for identifying micro #synteny (P073)
🦠our virus database #VirJenDB (P109)
🧬methylation biomarker detection in cancer research (P032)
🔧the tool sugar (P036) and it's application for identifying micro #synteny (P073)
🦠our virus database #VirJenDB (P109)
September 19, 2025 at 1:16 PM
📢 Part of our group will go to @gcb-bioinformatics.bsky.social next week! Join us at our posters to learn & discuss about:
🧬methylation biomarker detection in cancer research (P032)
🔧the tool sugar (P036) and it's application for identifying micro #synteny (P073)
🦠our virus database #VirJenDB (P109)
🧬methylation biomarker detection in cancer research (P032)
🔧the tool sugar (P036) and it's application for identifying micro #synteny (P073)
🦠our virus database #VirJenDB (P109)
🧾 Great paper by our doctoral researcher Maria and her collaboration partners from Belgium 🇧🇪 on the identification and functional genomic analyses of #Bartonella isolates from honey bees, and reassessment of the #taxonomy of the genus Bartonella 🐝
➡️ doi.org/10.1016/j.sy...
➡️ doi.org/10.1016/j.sy...
Redirecting
doi.org
September 19, 2025 at 1:03 PM
🧾 Great paper by our doctoral researcher Maria and her collaboration partners from Belgium 🇧🇪 on the identification and functional genomic analyses of #Bartonella isolates from honey bees, and reassessment of the #taxonomy of the genus Bartonella 🐝
➡️ doi.org/10.1016/j.sy...
➡️ doi.org/10.1016/j.sy...
🥳New publication by Manja and coauthors:
#Go game capture and reconstruction of missing moves using #DeepLearning techniques
🔗 doi.org/10.1109/CoG6...
#Go game capture and reconstruction of missing moves using #DeepLearning techniques
🔗 doi.org/10.1109/CoG6...
Go Game Capture and Reconstruction of Missing Moves Using Deep Learning Techniques
Recording and broadcasting Go games in real time remains a challenging task, as traditional methods rely on electronic boards or manual transcription, both of which have limitations in cost, convenien...
doi.org
September 19, 2025 at 12:54 PM
🥳New publication by Manja and coauthors:
#Go game capture and reconstruction of missing moves using #DeepLearning techniques
🔗 doi.org/10.1109/CoG6...
#Go game capture and reconstruction of missing moves using #DeepLearning techniques
🔗 doi.org/10.1109/CoG6...
Our group #retreat was full of discussions, collaboration, inspiration, and laughter (plus plenty of snacks and board games) 👩💻🗣️👏🍪🎲
A great 4 days with the team! #sciencelife #teamwork #bioinformatics
A great 4 days with the team! #sciencelife #teamwork #bioinformatics
September 19, 2025 at 12:30 PM
Our group #retreat was full of discussions, collaboration, inspiration, and laughter (plus plenty of snacks and board games) 👩💻🗣️👏🍪🎲
A great 4 days with the team! #sciencelife #teamwork #bioinformatics
A great 4 days with the team! #sciencelife #teamwork #bioinformatics
The summer semester is coming to an end and students are completing their final projects for the #Python lecture. Jan developed a smart energy management system to make optimal use of the energy generated by your solar cells 📉🌞🏡 #smarthome
➡️ janvogt06.github.io/SolarFlow-Sm...
➡️ janvogt06.github.io/SolarFlow-Sm...
SolarFlow - Smart Energy Manager
Smart Energy Manager - Maximize your solar self-consumption automatically
janvogt06.github.io
September 19, 2025 at 9:42 AM
The summer semester is coming to an end and students are completing their final projects for the #Python lecture. Jan developed a smart energy management system to make optimal use of the energy generated by your solar cells 📉🌞🏡 #smarthome
➡️ janvogt06.github.io/SolarFlow-Sm...
➡️ janvogt06.github.io/SolarFlow-Sm...
Another busy bee 🐝 from the Marz group:
Nori presented the #VirJenDB at #CORDi 2025 (Conference on Research Data Infrastructure) last week in Aachen! 👏🖥️
🔗 virjendb.org
Nori presented the #VirJenDB at #CORDi 2025 (Conference on Research Data Infrastructure) last week in Aachen! 👏🖥️
🔗 virjendb.org
September 5, 2025 at 7:09 AM
Another busy bee 🐝 from the Marz group:
Nori presented the #VirJenDB at #CORDi 2025 (Conference on Research Data Infrastructure) last week in Aachen! 👏🖥️
🔗 virjendb.org
Nori presented the #VirJenDB at #CORDi 2025 (Conference on Research Data Infrastructure) last week in Aachen! 👏🖥️
🔗 virjendb.org
Maria had a great time at the Microbes & RNA 2025 Meeting in #Strasbourg where she presented her #poster about #SweetSynteny, a #nextflow pipeline for nonambiguous identification of #ncRNA paralogues 👏🦠🧬📊 #MicrobialRNAs #conference
September 5, 2025 at 6:55 AM
Maria had a great time at the Microbes & RNA 2025 Meeting in #Strasbourg where she presented her #poster about #SweetSynteny, a #nextflow pipeline for nonambiguous identification of #ncRNA paralogues 👏🦠🧬📊 #MicrobialRNAs #conference
Learn more about #SweetSynteny, a #nextflow pipeline for nonambiguous identification of #ncRNA paralogues
– Visit #poster WE-41 of our doctoral researcher Maria at the Microbes & RNA 2025 Meeting in #Strasbourg tomorrow! #MicrobialRNAs #conference 🦠🧬🇫🇷
microbialrnameeting.com/program/
– Visit #poster WE-41 of our doctoral researcher Maria at the Microbes & RNA 2025 Meeting in #Strasbourg tomorrow! #MicrobialRNAs #conference 🦠🧬🇫🇷
microbialrnameeting.com/program/
Program – Microbes & RNA 2025
microbialrnameeting.com
September 2, 2025 at 11:28 AM
Learn more about #SweetSynteny, a #nextflow pipeline for nonambiguous identification of #ncRNA paralogues
– Visit #poster WE-41 of our doctoral researcher Maria at the Microbes & RNA 2025 Meeting in #Strasbourg tomorrow! #MicrobialRNAs #conference 🦠🧬🇫🇷
microbialrnameeting.com/program/
– Visit #poster WE-41 of our doctoral researcher Maria at the Microbes & RNA 2025 Meeting in #Strasbourg tomorrow! #MicrobialRNAs #conference 🦠🧬🇫🇷
microbialrnameeting.com/program/
🪢Viren falten ihre #RNA-Genome!
Wir haben alle #Pestivirus Genome untersucht und 32 gefaltete Strukturen entdeckt - Das könnte neue Wege eröffnen, Infektionen bei 🐖🐄🦇🐪🐭🐑🦒 zu bekämpfen.
➡️ Ganze Story im Blog: www.rna.uni-jena.de/unveiling-th...
Wir haben alle #Pestivirus Genome untersucht und 32 gefaltete Strukturen entdeckt - Das könnte neue Wege eröffnen, Infektionen bei 🐖🐄🦇🐪🐭🐑🦒 zu bekämpfen.
➡️ Ganze Story im Blog: www.rna.uni-jena.de/unveiling-th...
Unveiling the genome of pestiviruses and its hidden potential for antiviral strategies
Some viruses affect us humans, like the now all-too-familiar coronavirus SARS-CoV-2, while others mainly affect animals, such as pestiviruses that can infect pigs, cows, and even wild animals. And …
www.rna.uni-jena.de
August 29, 2025 at 7:15 AM
🪢Viren falten ihre #RNA-Genome!
Wir haben alle #Pestivirus Genome untersucht und 32 gefaltete Strukturen entdeckt - Das könnte neue Wege eröffnen, Infektionen bei 🐖🐄🦇🐪🐭🐑🦒 zu bekämpfen.
➡️ Ganze Story im Blog: www.rna.uni-jena.de/unveiling-th...
Wir haben alle #Pestivirus Genome untersucht und 32 gefaltete Strukturen entdeckt - Das könnte neue Wege eröffnen, Infektionen bei 🐖🐄🦇🐪🐭🐑🦒 zu bekämpfen.
➡️ Ganze Story im Blog: www.rna.uni-jena.de/unveiling-th...
🎉Congratulations to our group member Alexander Eberhardt for the successful defense of his dissertation and throwing the flower wreath onto Hanfrieds sword🎓💪
He studied gene regulation mechanisms in cancer cells in the Bierhoff group at @leibnizfli.bsky.social and gave great insights into his work🧬⚕️
He studied gene regulation mechanisms in cancer cells in the Bierhoff group at @leibnizfli.bsky.social and gave great insights into his work🧬⚕️
August 14, 2025 at 12:28 PM
🎉Congratulations to our group member Alexander Eberhardt for the successful defense of his dissertation and throwing the flower wreath onto Hanfrieds sword🎓💪
He studied gene regulation mechanisms in cancer cells in the Bierhoff group at @leibnizfli.bsky.social and gave great insights into his work🧬⚕️
He studied gene regulation mechanisms in cancer cells in the Bierhoff group at @leibnizfli.bsky.social and gave great insights into his work🧬⚕️
📢 Fresh paper alert!
🧊 Tom wrote a Python framework called sugar, which aims to facilitate rapid application development in bioinformatics.
📖 Check it out here: joss.theoj.org/papers/10.21...
#python #bioinformatics
🧊 Tom wrote a Python framework called sugar, which aims to facilitate rapid application development in bioinformatics.
📖 Check it out here: joss.theoj.org/papers/10.21...
#python #bioinformatics
Sugar: A Python framework for bioinformatics
Eulenfeld, T., (2025). Sugar: A Python framework for bioinformatics. Journal of Open Source Software, 10(111), 8122, https://doi.org/10.21105/joss.08122
joss.theoj.org
August 2, 2025 at 12:08 PM
📢 Fresh paper alert!
🧊 Tom wrote a Python framework called sugar, which aims to facilitate rapid application development in bioinformatics.
📖 Check it out here: joss.theoj.org/papers/10.21...
#python #bioinformatics
🧊 Tom wrote a Python framework called sugar, which aims to facilitate rapid application development in bioinformatics.
📖 Check it out here: joss.theoj.org/papers/10.21...
#python #bioinformatics
We had the pleasure of hosting Anne Pohlmann from the Lab for Biocuration of the FLI last week. She shared insights from huge (open) surveillance datasets of influenza virus outbreaks. One being that these are very hard to predict! Thank you Anne!
#research #avianflu #virus #surveillance
#research #avianflu #virus #surveillance
July 21, 2025 at 2:46 PM
We had the pleasure of hosting Anne Pohlmann from the Lab for Biocuration of the FLI last week. She shared insights from huge (open) surveillance datasets of influenza virus outbreaks. One being that these are very hard to predict! Thank you Anne!
#research #avianflu #virus #surveillance
#research #avianflu #virus #surveillance
Big thanks to our guest visitor Prof Horacio Guzman, head of the Biophysics & Intelligent Matter Lab at the Universidad Autonoma de Madrid.
Great to meet you last week and hear about the work happening in your lab! #rnaproteininteractions #rna3dstructure #virus #capsids
@gocompmodeling.bsky.social
Great to meet you last week and hear about the work happening in your lab! #rnaproteininteractions #rna3dstructure #virus #capsids
@gocompmodeling.bsky.social
June 26, 2025 at 1:27 PM
Big thanks to our guest visitor Prof Horacio Guzman, head of the Biophysics & Intelligent Matter Lab at the Universidad Autonoma de Madrid.
Great to meet you last week and hear about the work happening in your lab! #rnaproteininteractions #rna3dstructure #virus #capsids
@gocompmodeling.bsky.social
Great to meet you last week and hear about the work happening in your lab! #rnaproteininteractions #rna3dstructure #virus #capsids
@gocompmodeling.bsky.social
🐝🐝🐝 Congrats to Maria, Manja, Jelle and co-authors on your new publication! Throrough phylogenetic analysis and classification of a Bee bacterial pathogen group, Bartonella, led to a proposal for taxonomic reclassification! Read more here: www.sciencedirect.com/science/arti...
Identification and functional genomic analyses of Bartonella isolates from honey bees, and reassessment of the taxonomy of the genus Bartonella
We used matrix-assisted laser desorption/ionization time-of-flight mass spectrometry and whole-genome sequence analyses to identify 90 Bartonella isol…
www.sciencedirect.com
June 14, 2025 at 7:46 AM
🐝🐝🐝 Congrats to Maria, Manja, Jelle and co-authors on your new publication! Throrough phylogenetic analysis and classification of a Bee bacterial pathogen group, Bartonella, led to a proposal for taxonomic reclassification! Read more here: www.sciencedirect.com/science/arti...
Check out our recently published paper about identifying RNA modifications from raw Nanopore data: www.nature.com/articles/s42...
Congrats to Jannes, Manja and all the co-authors!
Congrats to Jannes, Manja and all the co-authors!
The RMaP challenge of predicting RNA modifications by nanopore sequencing - Communications Chemistry
RNA modifications play critical roles in gene expression regulation, RNA stability, and translation efficiency, however, the detection of RNA modifications by various sequencing approaches may present...
www.nature.com
April 28, 2025 at 2:52 PM
Check out our recently published paper about identifying RNA modifications from raw Nanopore data: www.nature.com/articles/s42...
Congrats to Jannes, Manja and all the co-authors!
Congrats to Jannes, Manja and all the co-authors!
Congrats to our #PhD student Sandra! She shared her discovery of conserved #RNA #secondarystructure features in the #Pestivirus family using a full genome alignment method at the #GfV2025 with an informative #poster
March 7, 2025 at 11:23 AM
Congrats to our #PhD student Sandra! She shared her discovery of conserved #RNA #secondarystructure features in the #Pestivirus family using a full genome alignment method at the #GfV2025 with an informative #poster
☀️ Greetings from #Hamburg! Smiles from our #NFDI4Microbiota virus database team's booth at the #GfV2025.
Curious?
✅️ Check out the beta version of the #database for and by #virus researchers at virjendb.org!
Curious?
✅️ Check out the beta version of the #database for and by #virus researchers at virjendb.org!
March 6, 2025 at 5:26 PM
☀️ Greetings from #Hamburg! Smiles from our #NFDI4Microbiota virus database team's booth at the #GfV2025.
Curious?
✅️ Check out the beta version of the #database for and by #virus researchers at virjendb.org!
Curious?
✅️ Check out the beta version of the #database for and by #virus researchers at virjendb.org!
Hi everyone! We have recently moved here similarly to @uni-jena.de and look forward to sharing the scientific and fun news from our RNA Bioinformatics lab!
More at: rna.uni-jena.de
More at: rna.uni-jena.de
a yellow chicken with the words `` hello '' written on it 's head .
ALT: a yellow chicken with the words `` hello '' written on it 's head .
media.tenor.com
March 6, 2025 at 5:09 PM
Hi everyone! We have recently moved here similarly to @uni-jena.de and look forward to sharing the scientific and fun news from our RNA Bioinformatics lab!
More at: rna.uni-jena.de
More at: rna.uni-jena.de