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The quiet revolution – revising ACMG criteria for epilepsy genes | Beyond the Ion Channel

...we just published our blog post on the revision of ACMG criteria for epilepsy-related sodium channels

epilepsygenetics.blog/2025/09/04/t...
September 4, 2025 at 9:39 PM
The quiet revolution – revising ACMG criteria for epilepsy genes

VUS. The story begins with a patient in clinic. A young child with severe epilepsy, carrying a variant in SCN1A, the classic gene for Dravet Syndrome. But the variant is labeled a variant of uncertain significance (VUS). Dravet…
The quiet revolution – revising ACMG criteria for epilepsy genes
VUS. The story begins with a patient in clinic. A young child with severe epilepsy, carrying a variant in SCN1A, the classic gene for Dravet Syndrome. But the variant is labeled a variant of uncertain significance (VUS). Dravet Syndrome is a clinical diagnosis, and the treatments we have today do not hinge on whether the variant is clearly pathogenic or not.
epilepsygenetics.blog
September 4, 2025 at 9:06 PM
The gentle singularity that cannot draw a synapse | Beyond the Ion Channel

..we just published our blog post on the struggle of generative AI to draw a synapse.

epilepsygenetics.blog/2025/08/30/t...
August 30, 2025 at 6:21 PM
The gentle singularity that cannot draw a synapse

Singularity. A few months ago, Sam Altman, the CEO of OpenAI, published a short essay about the future of artificial intelligence. His central message was a gentle role for AI—a vision in which technology supports us quietly in the background…
The gentle singularity that cannot draw a synapse
Singularity. A few months ago, Sam Altman, the CEO of OpenAI, published a short essay about the future of artificial intelligence. His central message was a gentle role for AI—a vision in which technology supports us quietly in the background rather than staging some dramatic takeover of human life. What caught my attention, however, was not the word “gentle” but the word “singularity.” For science fiction readers, this term carries weight.
epilepsygenetics.blog
August 30, 2025 at 6:13 PM
Influenza and acute necrotizing encephalopathy – the genetic dimension | Beyond the Ion Channel

...we just published our blog post on Acute necrotizing encephalopathy (ANE).

epilepsygenetics.blog/2025/08/28/i...
August 28, 2025 at 6:27 PM
Influenza and acute necrotizing encephalopathy – the genetic dimension

ANE. A rare complication with hidden genetic clues. Imagine a healthy child who goes to bed with a fever and wakes up unable to recognize their parents, slipping rapidly into coma. This is the terrifying course of acute…
Influenza and acute necrotizing encephalopathy – the genetic dimension
ANE. A rare complication with hidden genetic clues. Imagine a healthy child who goes to bed with a fever and wakes up unable to recognize their parents, slipping rapidly into coma. This is the terrifying course of acute necrotizing encephalopathy (ANE), one of the most severe neurological complications of influenza. In a recent study, children with influenza who developed ANE showed an unexpected pattern: nearly half of those tested carried genetic variants that might predispose them to this devastating complication.
epilepsygenetics.blog
August 28, 2025 at 6:16 PM
Different genes, convergent processes – rare disease lessons from neurogenesis | Beyond the Ion Channel

...we just published our blog post on the recent publication by Zhou et al. in Nature Neuroscience

epilepsygenetics.blog/2025/08/26/d...
August 26, 2025 at 6:04 PM
Different genes, convergent processes – rare disease lessons from neurogenesis

A paradox in the hippocampus. Immature dentate granule cells are often described as the “plasticity reserve” of the hippocampus. They provide a pool of neurons that integrate into existing circuits, supporting learning,…
Different genes, convergent processes – rare disease lessons from neurogenesis
A paradox in the hippocampus. Immature dentate granule cells are often described as the “plasticity reserve” of the hippocampus. They provide a pool of neurons that integrate into existing circuits, supporting learning, memory, and repair. In neurological disease, these cells have been suggested to buffer against injury or degeneration. In a recent publication, researchers showed that the hippocampus continues to generate new neurons throughout life, but that the molecular instructions for doing so vary dramatically across species.
epilepsygenetics.blog
August 26, 2025 at 5:00 PM
The placental mirror – methylation and neurodevelopment in congenital heart disease – Beyond the Ion Channel

...we just published our blog post on our recent publication on neuronal signatures in umbilical cord blood methylation patterns.

epilepsygenetics.blog/2025/08/24/t...
August 24, 2025 at 7:13 PM
The placental mirror – methylation and neurodevelopment in congenital heart disease

Neurodevelopment. Congenital heart disease (CHD) refers to a broad group of structural abnormalities of the heart that are present at birth and affect approximately 1% of all live births. Over the past two decades,…
The placental mirror – methylation and neurodevelopment in congenital heart disease
Neurodevelopment. Congenital heart disease (CHD) refers to a broad group of structural abnormalities of the heart that are present at birth and affect approximately 1% of all live births. Over the past two decades, advances in neonatal surgery and perioperative care have dramatically increased survival rates. Yet this success has revealed an important challenge, and focus has gradually shifted from the heart alone to the brain.
epilepsygenetics.blog
August 24, 2025 at 7:05 PM
Three things the beach told me about science in 2025 | Beyond the Ion Channel

...we just published our annual blog post about insights into rare disease research at the beach

epilepsygenetics.blog/2025/08/16/t...
August 16, 2025 at 10:03 PM
Three things the beach told me about science in 2025

Rehoboth. It has been a while since I posted my annual post-beach-vacation thoughts about how my experiences at the shore made me think about science. I initially started these posts after a vacation in Marielyst, Denmark when I realized that my…
Three things the beach told me about science in 2025
Rehoboth. It has been a while since I posted my annual post-beach-vacation thoughts about how my experiences at the shore made me think about science. I initially started these posts after a vacation in Marielyst, Denmark when I realized that my sandcastle building skills were not appreciated as much as I thought. This reminded me that similar things happen with our scientific achievements.
epilepsygenetics.blog
August 16, 2025 at 9:48 PM
Chasing the Demosthenes gene – the complex genetics of stuttering | Beyond the Ion Channel

...we just published our blog post on a recent large-scale genetic study on stuttering.

epilepsygenetics.blog/2025/08/13/c...
August 13, 2025 at 6:19 PM
Chasing the Demosthenes gene – the complex genetics of stuttering

Fluency. When we think of stuttering, we might first think of speech therapy, of pauses and repetitions, and of the courage it takes to speak when words get stuck. But what if we could step back and see its genetic architecture laid…
Chasing the Demosthenes gene – the complex genetics of stuttering
Fluency. When we think of stuttering, we might first think of speech therapy, of pauses and repetitions, and of the courage it takes to speak when words get stuck. But what if we could step back and see its genetic architecture laid out across the globe? A recent study looked at the genetics of stuttering at an unprecedented scale: over 1.1 million individuals, including almost 100,000 people who self-reported a history of stuttering.
epilepsygenetics.blog
August 13, 2025 at 6:06 PM
Beyond Sleep: BMAL1 links circadian time to neurodevelopment and epilepsy | Beyond the Ion Channel

...here is our blog post on BMAL1 (ARNTL), a core component of the circadian clock, and neurodevelopmental disorders.

epilepsygenetics.blog/2025/08/10/b...
August 11, 2025 at 4:08 PM
Beyond Sleep: BMAL1 links circadian time to neurodevelopment and epilepsy

The clock gene. Every cell in the human body keeps time. This intrinsic rhythm is roughly 24 hours long and driven by the molecular circadian clock: a transcriptional feedback loop that helps regulate sleep, metabolism, and…
Beyond Sleep: BMAL1 links circadian time to neurodevelopment and epilepsy
The clock gene. Every cell in the human body keeps time. This intrinsic rhythm is roughly 24 hours long and driven by the molecular circadian clock: a transcriptional feedback loop that helps regulate sleep, metabolism, and hormone release. But what happens when these timekeepers stop working? In a recent study, we explored the role of BMAL1 (ARNTL), a core circadian regulator, in neurodevelopmental disorders.
epilepsygenetics.blog
August 10, 2025 at 11:01 AM
Tenure into the Unknown | Beyond the Ion Channel

...in July 2025, I was granted tenure at the University of Pennsylvania.

...here is my blog post about the historic Cistercian abbey in my hometown, academic reforms in the 19th century, and what to do with tenure in 2025.
August 8, 2025 at 1:10 PM
Tenure into the Unknown

Monastic. I am now roughly one month into the first real job of my life. I celebrated this transition by spending a week with my family in Kamp-Lintfort, Germany, a small town at the Western edge of the Ruhr area known for its coal mining heritage and Cistercian abbey.…
Tenure into the Unknown
Monastic. I am now roughly one month into the first real job of my life. I celebrated this transition by spending a week with my family in Kamp-Lintfort, Germany, a small town at the Western edge of the Ruhr area known for its coal mining heritage and Cistercian abbey. After two decades of training roles and academic positions that were either time-limited or contingent, I was tenured at the University of Pennsylvania in July 2025.
epilepsygenetics.blog
August 8, 2025 at 11:46 AM
The power of paralogs in epilepsy genetics | Beyond the Ion Channel

...we just published our post on our recent publication on the importance of identical variants at conserved sites in epilepsy genes.

epilepsygenetics.blog/2025/07/29/t...
July 29, 2025 at 1:16 PM
The power of paralogs in epilepsy genetics

Paralogs. Every week in our variant review meetings, we encounter a familiar issue: understanding a missense variant of uncertain significance. Unless it matches a known disease-associated variant or is found to be de novo, our confidence often stalls.…
The power of paralogs in epilepsy genetics
Paralogs. Every week in our variant review meetings, we encounter a familiar issue: understanding a missense variant of uncertain significance. Unless it matches a known disease-associated variant or is found to be de novo, our confidence often stalls. But what happens if we stopped looking at genes in isolation? In a recent publication, we had the opportunity to explore this idea by looking at paralogs and variants at identical sites across gene families, and we found evidence that was strong enough to be included in the official ACMG/AMP variant curation criteria.
epilepsygenetics.blog
July 29, 2025 at 11:45 AM
The rare disease with fastest growing knowledge – the 2025 STXBP1 Summit+ | Beyond the Ion Channel

...we just published our blog post on the 2025 STXBP1 Family Summit+ in Westminster, Colorado

epilepsygenetics.blog/2025/07/26/t...
July 26, 2025 at 3:29 PM
AP2M1 and the mystery of missing haploinsufficient genes | Beyond the Ion Channel

...we just published our blog post on AP2M1 as the candidate gene in the 3q27 microdeletion

...and the broader issue of missing haploinsufficient genes

epilepsygenetics.blog/2025/07/21/a...
July 22, 2025 at 10:42 AM
RT @NeuroWoodworks: An astrocyte sculpture made out of cherry wood. Neurons are not the only important cells of the brain!!!
July 14, 2025 at 1:56 PM
Beyond the Ion Channel | RBFOX3 and the Hunt for Epilepsy Genes in 100,000 Genomes

...we just published our post of the discovery of RBFOX3 as a candidate gene from the 100,000 Genomes Project
July 11, 2025 at 12:15 PM
Five principles for teaching epilepsy genetics | Beyond the Ion Channel

...our blog post celebrating the 5th anniversary of our ENGIN epilepsy genetics fellowship

epilepsygenetics.blog/2025/07/08/f...
July 8, 2025 at 4:34 PM