Gillian Chu
@gillianychu.bsky.social
Computer science PhD candidate. Raphael Lab, Princeton. Designing probabilistic models for evolutionary biology. | gillichu.github.io | Free time spent running, volunteering, and on side projects.
The culmination of several PhD years — today LAML is published! LAML infers max likelihood time-resolved cell lineage trees from dynamic lineage tracing data accurately and efficiently. Thanks to @braphael.bsky.social for his guidance! genomebiology.biomedcentral.com/articles/10....
Maximum likelihood inference of time-scaled cell lineage trees with mixed-type missing data using LAML - Genome Biology
Dynamic lineage tracing technologies combine genome editing with single-cell sequencing to track cell divisions. We introduce Lineage Analysis via Maximum Likelihood (LAML) to infer a maximum likeliho...
genomebiology.biomedcentral.com
July 2, 2025 at 12:37 PM
The culmination of several PhD years — today LAML is published! LAML infers max likelihood time-resolved cell lineage trees from dynamic lineage tracing data accurately and efficiently. Thanks to @braphael.bsky.social for his guidance! genomebiology.biomedcentral.com/articles/10....
@cra-hq.bsky.social Pleased to have been at CRA-WP presenting work on LAML last week!
April 10, 2025 at 6:43 PM
@cra-hq.bsky.social Pleased to have been at CRA-WP presenting work on LAML last week!
Reposted by Gillian Chu
Looking forward to my seminar trip to Princeton Computer Science next week! www.cs.princeton.edu/events/26752
Learning Multiscale Genome and Cellular Organization | Computer Science Department at Princeton University
www.cs.princeton.edu
November 30, 2024 at 2:26 AM
Looking forward to my seminar trip to Princeton Computer Science next week! www.cs.princeton.edu/events/26752
Reposted by Gillian Chu
Imagine a mouse in which all 10 billion cells keep a diary from fertilization. Imagine sentinel cells recording your experiences and sending out dispatches in the form of DNA. Here's a story I wrote about cell recorders 🧪 Gift link: nyti.ms/3Z3Mqza
‘DNA Typewriters’ Can Record a Cell’s History
Labs around the world are trying to turn cells into autobiographers, tracking their own development from embryos to adults.
nyti.ms
November 25, 2024 at 4:19 PM
Imagine a mouse in which all 10 billion cells keep a diary from fertilization. Imagine sentinel cells recording your experiences and sending out dispatches in the form of DNA. Here's a story I wrote about cell recorders 🧪 Gift link: nyti.ms/3Z3Mqza
Pleased to have been at @cshlaboratory.bsky.social attending Biological Data Science 2024 these past few days presenting our work on LAML, to infer cell lineage trees from dynamic lineage tracing data. #cshl
November 16, 2024 at 4:08 PM
Pleased to have been at @cshlaboratory.bsky.social attending Biological Data Science 2024 these past few days presenting our work on LAML, to infer cell lineage trees from dynamic lineage tracing data. #cshl