Our expertise in single-cell transcriptomics in organisms with fragmentary annotation is illustrated by this new study in chick, revealing new roles for Cdkn1 in the neurogenic transition.

Are you working with exotic/non-model species? 🐸🐠🐓🦋🐝
Your annotation needs improvement to ensure RNA-seq or single-cell RNA-seq counts are correctly handled (for exemple the 3’UTRs)?

🧬Searching for a Nanopore RNA-seq protocol that generates longer reads than the manufacturer’s protocol, and applicable for low-input material ? 🤔

🎉 We are very proud of Ali Hamraoui who defend his PhD thesis on bioinformatics approaches to study isoforms with single-cell long-read technologies.

🚀 Our new preprint is now live on bioRxiv!
“A systematic benchmark of bioinformatics methods for single-cell and spatial RNA-seq Nanopore long-read data”
🔗 Read here: www.biorxiv.org/content/10.1...

🔬 About the study
We present the first comprehensive benchmark of bioinformatics tools 👇

🎉 Our core facility has just renewed its certifications ISO 9001 and NFX-50-900 ! These certifications are particularly important with regards to our users, but also as we are member of @fr-genomics.bsky.social.

For our 1st post on Bluesky, we are excited to announce the publication of our new #bioinformatics tool #Asarusim for #SingleCellRNAseq coupled with @nanoporetech.com sequencing ! 🎉 🎊
👉 article : academic.oup.com/bioinformati...
👉 GitHub : github.com/GenomiqueENS...

cc @fr-genomics.bsky.social