Genetics ML Papers
@geneticsmlpapers.bsky.social
A generic pipeline for CADD score generation: chickenCADD and turkeyCADD https://academic.oup.com/g3journal/article/doi/10.1093/g3journal/jkaf272/8321220
January 19, 2026 at 2:01 PM
A generic pipeline for CADD score generation: chickenCADD and turkeyCADD https://academic.oup.com/g3journal/article/doi/10.1093/g3journal/jkaf272/8321220
Genomic prediction of feed efficiency in boars by deep learning https://academic.oup.com/g3journal/article/doi/10.1093/g3journal/jkaf274/8323593
January 19, 2026 at 1:56 PM
Genomic prediction of feed efficiency in boars by deep learning https://academic.oup.com/g3journal/article/doi/10.1093/g3journal/jkaf274/8323593
Decoding the germline genetic architecture of prostate cancer at a single cell resolution https://journals.plos.org/plosgenetics/article
January 19, 2026 at 1:51 PM
Decoding the germline genetic architecture of prostate cancer at a single cell resolution https://journals.plos.org/plosgenetics/article
Identification and Classification of Expressed Orphan Genes, Spurious Orphan Genes, and Conserved Genes in the Human Gut Microbiome
https://www.biorxiv.org/content/10.64898/2026.01.16.699869v1
January 19, 2026 at 1:46 PM
Identification and Classification of Expressed Orphan Genes, Spurious Orphan Genes, and Conserved Genes in the Human Gut Microbiome
https://www.biorxiv.org/content/10.64898/2026.01.16.699869v1
Extending Conformational Ensemble Prediction to Multidomain Proteins and Protein Complex
https://www.biorxiv.org/content/10.64898/2026.01.14.699584v1
January 19, 2026 at 1:41 PM
Extending Conformational Ensemble Prediction to Multidomain Proteins and Protein Complex
https://www.biorxiv.org/content/10.64898/2026.01.14.699584v1
Label-free detection of individual virus-infected cells using deep learning
https://www.biorxiv.org/content/10.64898/2026.01.15.699499v1
January 19, 2026 at 1:36 PM
Label-free detection of individual virus-infected cells using deep learning
https://www.biorxiv.org/content/10.64898/2026.01.15.699499v1
Leveraging Unified Sequence-Structure Representations for Enhanced Protein Stability Prediction
https://www.biorxiv.org/content/10.64898/2026.01.15.699740v1
January 19, 2026 at 1:31 PM
Leveraging Unified Sequence-Structure Representations for Enhanced Protein Stability Prediction
https://www.biorxiv.org/content/10.64898/2026.01.15.699740v1
TomoSegNet: Augmented membrane segmentation for cryo-electron tomography by simulating the cellular context
https://www.biorxiv.org/content/10.64898/2026.01.15.699326v1
January 19, 2026 at 1:26 PM
TomoSegNet: Augmented membrane segmentation for cryo-electron tomography by simulating the cellular context
https://www.biorxiv.org/content/10.64898/2026.01.15.699326v1
PathDiffusion: modeling protein folding pathway using evolution-guided diffusion
https://www.biorxiv.org/content/10.64898/2026.01.16.699856v1
January 19, 2026 at 1:21 PM
PathDiffusion: modeling protein folding pathway using evolution-guided diffusion
https://www.biorxiv.org/content/10.64898/2026.01.16.699856v1
TcrDesign: De novo design of epitope specific full-length T cell receptors
https://www.biorxiv.org/content/10.64898/2026.01.15.699824v1
January 19, 2026 at 1:16 PM
TcrDesign: De novo design of epitope specific full-length T cell receptors
https://www.biorxiv.org/content/10.64898/2026.01.15.699824v1
SE3Bind: SE(3)-equivariant model for antibody-antigen binding affinity prediction
https://www.biorxiv.org/content/10.64898/2026.01.17.700115v1
January 19, 2026 at 1:11 PM
SE3Bind: SE(3)-equivariant model for antibody-antigen binding affinity prediction
https://www.biorxiv.org/content/10.64898/2026.01.17.700115v1
A generic pipeline for CADD score generation: chickenCADD and turkeyCADD https://academic.oup.com/g3journal/article/doi/10.1093/g3journal/jkaf272/8321220
January 12, 2026 at 2:06 PM
A generic pipeline for CADD score generation: chickenCADD and turkeyCADD https://academic.oup.com/g3journal/article/doi/10.1093/g3journal/jkaf272/8321220
Genomic prediction of feed efficiency in boars by deep learning https://academic.oup.com/g3journal/article/doi/10.1093/g3journal/jkaf274/8323593
January 12, 2026 at 2:01 PM
Genomic prediction of feed efficiency in boars by deep learning https://academic.oup.com/g3journal/article/doi/10.1093/g3journal/jkaf274/8323593
Decoding the germline genetic architecture of prostate cancer at a single cell resolution https://journals.plos.org/plosgenetics/article
January 12, 2026 at 1:56 PM
Decoding the germline genetic architecture of prostate cancer at a single cell resolution https://journals.plos.org/plosgenetics/article
Novel estimation of memory in molecular dynamics with extended and comprehensive single-molecule tracking software: FreeTrace
https://www.biorxiv.org/content/10.64898/2026.01.08.698486v1
January 12, 2026 at 1:51 PM
Novel estimation of memory in molecular dynamics with extended and comprehensive single-molecule tracking software: FreeTrace
https://www.biorxiv.org/content/10.64898/2026.01.08.698486v1
Teddy: neural inference of epidemiological parameters from viral sequences
https://www.biorxiv.org/content/10.64898/2026.01.05.697728v1
January 12, 2026 at 1:46 PM
Teddy: neural inference of epidemiological parameters from viral sequences
https://www.biorxiv.org/content/10.64898/2026.01.05.697728v1
DNA sequence quantitatively encodes CTCF-binding affinity at genome scale
https://www.biorxiv.org/content/10.64898/2026.01.05.696797v1
January 12, 2026 at 1:40 PM
DNA sequence quantitatively encodes CTCF-binding affinity at genome scale
https://www.biorxiv.org/content/10.64898/2026.01.05.696797v1
A standardized atlas of human bronchoalveolar lavage cells built using scalable ensemble annotation and cross-study robust markers
https://www.biorxiv.org/content/10.64898/2026.01.08.698293v1
January 12, 2026 at 1:35 PM
A standardized atlas of human bronchoalveolar lavage cells built using scalable ensemble annotation and cross-study robust markers
https://www.biorxiv.org/content/10.64898/2026.01.08.698293v1
Context-aware Multi-Property Antibody Predictor: a Novel Framework Integrating Text and Protein Language Models
https://www.biorxiv.org/content/10.64898/2026.01.07.698270v1
January 12, 2026 at 1:30 PM
Context-aware Multi-Property Antibody Predictor: a Novel Framework Integrating Text and Protein Language Models
https://www.biorxiv.org/content/10.64898/2026.01.07.698270v1
Deep Learning-Driven Fragment Ion Selection for Improved Quantification in MS based Proteomics
https://www.biorxiv.org/content/10.64898/2026.01.08.698341v1
January 12, 2026 at 1:25 PM
Deep Learning-Driven Fragment Ion Selection for Improved Quantification in MS based Proteomics
https://www.biorxiv.org/content/10.64898/2026.01.08.698341v1
Efficient training of neural networks using natural vectors with covariates for the plant microRNA precursor prediction.
https://www.biorxiv.org/content/10.64898/2026.01.08.693543v1
January 12, 2026 at 1:20 PM
Efficient training of neural networks using natural vectors with covariates for the plant microRNA precursor prediction.
https://www.biorxiv.org/content/10.64898/2026.01.08.693543v1
Love-thy-neighbor: Neural networks for tracking and lineage tracing in budding yeast
https://www.biorxiv.org/content/10.64898/2026.01.09.698579v1
January 12, 2026 at 1:15 PM
Love-thy-neighbor: Neural networks for tracking and lineage tracing in budding yeast
https://www.biorxiv.org/content/10.64898/2026.01.09.698579v1
SegJointGene: joint cell segmentation and spatial gene prioritization by information entropy guided convolutional neural networks
https://www.biorxiv.org/content/10.64898/2026.01.08.698474v1
January 12, 2026 at 1:10 PM
SegJointGene: joint cell segmentation and spatial gene prioritization by information entropy guided convolutional neural networks
https://www.biorxiv.org/content/10.64898/2026.01.08.698474v1
tRNA isodecoder analysis using Nanopore ionic current signals and deep learning
https://www.biorxiv.org/content/10.64898/2025.12.27.696718v1
January 5, 2026 at 2:41 PM
tRNA isodecoder analysis using Nanopore ionic current signals and deep learning
https://www.biorxiv.org/content/10.64898/2025.12.27.696718v1
Intrinsic DNA sequence determinants and tissue-specific regulation of human replication origins
https://www.biorxiv.org/content/10.64898/2025.12.28.696672v1
January 5, 2026 at 2:36 PM
Intrinsic DNA sequence determinants and tissue-specific regulation of human replication origins
https://www.biorxiv.org/content/10.64898/2025.12.28.696672v1