Gang Chen
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gangchen6.bsky.social
Gang Chen
@gangchen6.bsky.social
Statistical modeling, Bayesian inference, causal effect estimation, hierarchical structures; FMRI data analysis; classical music; jogging; reading; meandering
Representational Similarity Analysis (RSA) is a popular method in cognitive neuroscience for comparing representational patterns across conditions. It follows a "correlation-of-correlations" logic: compute (dis)similarities within each representational space, then correlate them across spaces.
November 4, 2025 at 11:11 AM
Data only shows associations. Turning those into claims about mechanism or causation? That requires a Rosetta Stone of prior knowledge + theory. Resting-state fMRI is purely observational; correlation is its currency. From this, plenty of "theoretical toys" about brain function can be built...
Resting-State fMRI and the Risk of Overinterpretation: Noise, Mechanisms, and a Missing Rosetta Stone https://www.biorxiv.org/content/10.1101/2025.09.16.676611v1
September 20, 2025 at 1:13 AM
Blind data cleaning, automated pipelines and dichotomized results may give the illusion of standardization, rigor and reproducibility, but they risk turning science into ritual over inquiry. When mechanisms are obscure, don’t pretend they’re fixed; perhaps embrace variability and think creatively?
July 27, 2025 at 9:10 PM
Reposted by Gang Chen
**FMRI/neuroimaging folks**

Quick reminder @ the next AFNI Bootcamp: May 28-30, 2025. Learn through interactive data analysis!

Day 1-2: data viz, single subject analysis and QC.
Day 3: statistics, results reporting and group analysis.

Details, registration and schedule:
afni.nimh.nih.gov/bootcamp
May 22, 2025 at 6:42 PM
Reposted by Gang Chen
We are pleased to announce the next AFNI Bootcamp, May 28-30, 2025.

First 2 days: data visualization, single subject analysis and QC. 3rd day: statistics, results reporting and group analysis.

Please see here for details, registration link and preliminary schedule:
afni.nimh.nih.gov/bootcamp
AFNI Bootcamp: May 28-30, 2025 | afni.nimh.nih.gov
afni.nimh.nih.gov
May 7, 2025 at 6:37 PM
Science doesn’t grow in a vacuum; it thrives on shared ideas and fresh perspectives. Thanks to #sans2025 for building bridges and connecting the dots, and to @elisabaek.bsky.social & @jfguassimoreira.bsky.social for creating the opportunity!
April 26, 2025 at 10:13 PM
For those who think more data just means more headcount, here’s a quirky twist: the number of data points per individual actually matters--a lot. If you're into a bit of rigor, this article highlights a factor that’s often overlooked. Thanks for the shoutout!
www.sciencedirect.com/science/arti...
April 24, 2025 at 10:02 PM
The mind craves binaries: good or bad, true or false, on or off. It’s tidy. It’s comforting. But the world rarely plays along. Reality tends to unfold in gradients, not in absolutes. And so does statistical evidence. Data analysis doesn’t speak in black and white, but in shades of uncertainty.
The result of a large (42 authors!) collaboration:
"Go Figure: Transparency in neuroscience images preserves context and clarifies interpretation"
arxiv.org/abs/2504.07824
TL;DR: The FMRI world can (and should) improve results interpretation and reproducibility *today*, via transparent thresholding.
April 12, 2025 at 8:35 PM
Reposted by Gang Chen
Do you like genes and estimating heritability? Then @gangchen6.bsky.social and D. Moraczewski have important news for you.

Conventional estimation methods ignore measurement error, leading to a bias. Don't worry: hierarchical modeling to the rescue!

www.frontiersin.org/journals/gen...
April 2, 2025 at 1:44 PM
The p-value arms race has reached a new milestone -- 10⁻²⁶². At this quantum level of super precision, statistical modeling in quantitative genetics is on the verge of breaking the uncertainty principle.
March 22, 2025 at 6:45 PM
Another great example of modeling philosophy: Respect the data-generating process as much as the theoretical constructs when building models.
1/6 Hello Bluesky! 👋 Excited to join this community and share my new blog. First post: Using Bayesian hierarchical models to rescue "unreliable" cognitive tasks, with the dot-probe task as my case study. cogpsychreserve.netlify.app/posts/dotpro...
The Dot-Probe Task is Probably Fine – CogPsych Reserve
cogpsychreserve.netlify.app
March 7, 2025 at 12:58 PM
Research is the ultimate adventure--riddled with unexpected hurdles and moments of frustration. Yet, it's the rare light at the end of the tunnel and the thrill of surprises that illuminate the path and propel the journey forward.
January 20, 2025 at 10:02 PM
Reposted by Gang Chen
Maybe slightly odd timing, but we'd like to announce:

A new AFNI Bootcamp for FMRI/MRI, Jan 29-31, 2025. This part will focus on group analysis, statistics, surface analyses, results reporting and more.

This event will be virtual. Please see here:
discuss.afni.nimh.nih.gov/t/afni-bootc...
AFNI Bootcamp, Part 2: Jan 29-31, 2025 (Virtual)
We are pleased to announce a new AFNI Bootcamp, taking place Jan 29-31, 2025. Registration is free and open to both NIH and non-NIH researchers. The course is aimed at people who have some familiarit...
discuss.afni.nimh.nih.gov
December 20, 2024 at 10:06 PM
Let’s flip the script on calling a spade a spade:

1) Does calling a correlation a correlation hurt its feelings or make it less accurate?

2) Does calling a correlation a correlation mislead the public or cause mass confusion?
Seriously, neuroscientists here: why do you call "brain connectivity" what it's just correlations of some type?

Using the word connectivity is misleading, since it relates to structure and no way this is correct w/o a robust assessment. You can observe this just by changing params in dynamics.
When writing by hand, brain connectivity patterns were far more elaborate than when typewriting on a keyboard, as shown by widespread theta/alpha connectivity coherence patterns between network hubs and nodes in parietal and central brain regions. 6/10
December 19, 2024 at 4:04 PM
Programming: where failure lurks around every corner, and debugging feels like trudging through a minefield. Yet, there's magic in the madness—when the code finally works and offers a generic solution, it's like wielding a Swiss Army knife with a triumphant smile.
November 28, 2024 at 11:24 PM
Reposted by Gang Chen
Does anyone know of an open or publicly available by request #EEG or #MEG dataset suitable for studying the interaction between circadian rhythms and changes in the signal?
November 24, 2024 at 1:31 AM
Science is about uncovering how causes create effects. Covariate selection may seem like a small step in model building -- but it can spark big chaos if mishandled. Glad to share the lesson we learned: don’t let your model wag the science; let science lead the way in model building.
Chen et al. present an exploration of causal inference principles to guide experimental design, model-building, and result interpretation: doi.org/10.52294/001...

@gangchen6.bsky.social @afni-pt.bsky.social @fmri-today.bsky.social
November 22, 2024 at 4:39 PM