Emil Hägglund
@emilhaegglund.bsky.social
PhD student in molecular evolution at Uppsala University. Trying to understand the peculiar traits of Planctomycetes.
Reposted by Emil Hägglund
We are excited to release v1.0 of our HG002 genome benchmark today! Our goal with the Q100 project is to create a complete and perfectly accurate representation of the diploid HG002 genome to serve as a replacement for current variant-based benchmarks. More info here: github.com/marbl/HG002
GitHub - marbl/HG002: A complete diploid human genome
A complete diploid human genome. Contribute to marbl/HG002 development by creating an account on GitHub.
github.com
October 31, 2023 at 10:09 PM
We are excited to release v1.0 of our HG002 genome benchmark today! Our goal with the Q100 project is to create a complete and perfectly accurate representation of the diploid HG002 genome to serve as a replacement for current variant-based benchmarks. More info here: github.com/marbl/HG002
Reposted by Emil Hägglund
AleRax: A tool for gene and species tree co-estimation and reconciliation under a probabilistic model of gene duplication, transfer and loss
www.biorxiv.org/content/10.1...
www.biorxiv.org/content/10.1...
October 9, 2023 at 1:15 PM
AleRax: A tool for gene and species tree co-estimation and reconciliation under a probabilistic model of gene duplication, transfer and loss
www.biorxiv.org/content/10.1...
www.biorxiv.org/content/10.1...
Reposted by Emil Hägglund
Adaptive RAxML-NG: Accelerating Phylogenetic Inference under Maximum Likelihood using dataset difficulty academic.oup.com/mbe/advance-... #jcampubs
Adaptive RAxML-NG: Accelerating Phylogenetic Inference under Maximum Likelihood using dataset diffic...
Abstract. Phylogenetic inferences under the Maximum-Likelihood criterion deploy heuristic tree search strategies to explore the vast search space. Depending on
academic.oup.com
October 9, 2023 at 1:15 PM
Adaptive RAxML-NG: Accelerating Phylogenetic Inference under Maximum Likelihood using dataset difficulty academic.oup.com/mbe/advance-... #jcampubs
Reposted by Emil Hägglund
We need more of this: sciencebusiness.net/news/how-let...
How letting researchers have fun pays off
Researchers are tired. They spent their days looking for funding and when they find it, it comes with a myriad of bureaucratic and objective-driven strings attached. A chosen few may get their hands o...
sciencebusiness.net
September 29, 2023 at 6:15 AM
We need more of this: sciencebusiness.net/news/how-let...
This is an exciting methods paper on using structural information for phylogenetics from Moi et al. I wonder if this method can be extended to use data from several proteins to infer species relationships.
www.biorxiv.org/content/10.1...
www.biorxiv.org/content/10.1...
September 27, 2023 at 9:58 AM
This is an exciting methods paper on using structural information for phylogenetics from Moi et al. I wonder if this method can be extended to use data from several proteins to infer species relationships.
www.biorxiv.org/content/10.1...
www.biorxiv.org/content/10.1...
Why am I not surprised, another Planctomycetota that doesn’t follow the rules
elifesciences.org/reviewed-pre...
elifesciences.org/reviewed-pre...
September 22, 2023 at 8:57 PM
Why am I not surprised, another Planctomycetota that doesn’t follow the rules
elifesciences.org/reviewed-pre...
elifesciences.org/reviewed-pre...
I just put this here, if you ever need to collapse clades in a phylogeny and visualize it in FigTree I have a script that does this github.com/emilhaegglun...
September 14, 2023 at 2:42 PM
I just put this here, if you ever need to collapse clades in a phylogeny and visualize it in FigTree I have a script that does this github.com/emilhaegglun...