Reposted by Ali Oku
A decade ago, we had thousands of bacterial genomes. Now, we have millions. How to scale computational methods?
Our paper in @naturemethods.bsky.social answers this: use evolutionary history to guide compression and search.
rdcu.be/eg4OA
w/ @baym.lol, @zaminiqbal.bsky.social et al. 🧵1/
Our paper in @naturemethods.bsky.social answers this: use evolutionary history to guide compression and search.
rdcu.be/eg4OA
w/ @baym.lol, @zaminiqbal.bsky.social et al. 🧵1/
April 11, 2025 at 3:01 PM
A decade ago, we had thousands of bacterial genomes. Now, we have millions. How to scale computational methods?
Our paper in @naturemethods.bsky.social answers this: use evolutionary history to guide compression and search.
rdcu.be/eg4OA
w/ @baym.lol, @zaminiqbal.bsky.social et al. 🧵1/
Our paper in @naturemethods.bsky.social answers this: use evolutionary history to guide compression and search.
rdcu.be/eg4OA
w/ @baym.lol, @zaminiqbal.bsky.social et al. 🧵1/
Reposted by Ali Oku
A link between yogurt intake and reduce risk of colon cancer, from cohort of over 130,00 participants, with inverse relationship to Bifidobacterium in gut microbiome
www.tandfonline.com/doi/full/10.... open-access
www.tandfonline.com/doi/full/10.... open-access
February 12, 2025 at 6:18 PM
A link between yogurt intake and reduce risk of colon cancer, from cohort of over 130,00 participants, with inverse relationship to Bifidobacterium in gut microbiome
www.tandfonline.com/doi/full/10.... open-access
www.tandfonline.com/doi/full/10.... open-access
Reposted by Ali Oku
First dataset for the new @huggingface.bsky.social @bsky.app community organisation: one-million-bluesky-posts 🦋
📊 1M public posts from Bluesky's firehose API
🔍 Includes text, metadata, and language predictions
🔬 Perfect to experiment with using ML for Bluesky 🤗
huggingface.co/datasets/blu...
📊 1M public posts from Bluesky's firehose API
🔍 Includes text, metadata, and language predictions
🔬 Perfect to experiment with using ML for Bluesky 🤗
huggingface.co/datasets/blu...
bluesky-community/one-million-bluesky-posts · Datasets at Hugging Face
We’re on a journey to advance and democratize artificial intelligence through open source and open science.
huggingface.co
November 26, 2024 at 1:50 PM
First dataset for the new @huggingface.bsky.social @bsky.app community organisation: one-million-bluesky-posts 🦋
📊 1M public posts from Bluesky's firehose API
🔍 Includes text, metadata, and language predictions
🔬 Perfect to experiment with using ML for Bluesky 🤗
huggingface.co/datasets/blu...
📊 1M public posts from Bluesky's firehose API
🔍 Includes text, metadata, and language predictions
🔬 Perfect to experiment with using ML for Bluesky 🤗
huggingface.co/datasets/blu...
Reposted by Ali Oku
Not checking nuclear markers like MALAT1 or intronic reads in your scRNA-seq data?🚨
We show their power to flag low-quality cells—even in top public datasets. It’s time to prioritize better QC for cleaner, more reliable genomics research!
Read more: bmcgenomics.biomedcentral.com/articles/10....
1/8
High content of nuclei-free low-quality cells in reference single-cell atlases: a call for more stringent quality control using nuclear fraction - BMC Genomics
The advent of droplet-based single-cell RNA-sequencing (scRNA-seq) has dramatically increased data throughput, enabling the release of a diverse array of tissue cell atlases to the public. However, we...
bmcgenomics.biomedcentral.com
December 3, 2024 at 8:38 AM
Not checking nuclear markers like MALAT1 or intronic reads in your scRNA-seq data?🚨
We show their power to flag low-quality cells—even in top public datasets. It’s time to prioritize better QC for cleaner, more reliable genomics research!
Read more: bmcgenomics.biomedcentral.com/articles/10....
1/8