Ziqi DENG
dengziqi1991.bsky.social
Ziqi DENG
@dengziqi1991.bsky.social
Postdoc in
@CBGP_Madrid
developing computational methods for phylogenetic and metagenomic analysis in
@cgmlaboratory
github.com/dengzq1234/
Many thanks travel funds support from Conexión BCB of @csic.es to make it happen!
It could be very overwhelming with all the biological stories going in a few days. Considering a few minutes for something lighter? Here we present just a software TreeProfiler to help your large scale phylogenetic analysis and visualization. Considering it for your arsenal! @eseb2025.bsky.social
August 21, 2025 at 4:44 PM
It could be very overwhelming with all the biological stories going in a few days. Considering a few minutes for something lighter? Here we present just a software TreeProfiler to help your large scale phylogenetic analysis and visualization. Considering it for your arsenal! @eseb2025.bsky.social
August 21, 2025 at 2:51 PM
Reposted by Ziqi DENG
For those at #ESEB2025 today please come along to my poster! Excited to talk about how powerful mutation bias can be in adaptation :)

@eseb2025.bsky.social @eseb.bsky.social
August 19, 2025 at 7:38 AM
I will present my work TreeProfiler in #eseb2025 @eseb2025.bsky.social at poster session on Thursday 19:00-21:00. Welcome to stop by at P03 315! :)
Awesome work by Ziqi Deng: TreeProfiler: a tool for large-scale metadata profiling along gene and species trees.
biorxiv.org/content/10.1...
Interactive dynamic visualization of large trees + custom traits, MSA, domain architectures, functional terms & more + summary of features at internal nodes
August 17, 2025 at 10:46 AM
Reposted by Ziqi DENG
The rare microbial biosphere harbors many chemosensitive microorganisms undetectable by regular shotgun metagenomics. We can now explore them using our custom target-capture sequencing approach. Impressive work by
Claudia Sanchis, part of her PhD thesis!
www.biorxiv.org/content/10.1...
June 25, 2025 at 7:25 PM
Reposted by Ziqi DENG
Awesome work by Ziqi Deng: TreeProfiler: a tool for large-scale metadata profiling along gene and species trees.
biorxiv.org/content/10.1...
Interactive dynamic visualization of large trees + custom traits, MSA, domain architectures, functional terms & more + summary of features at internal nodes
June 20, 2025 at 5:43 PM
We have updated our work "TreeProfiler: a tool for large-scale metadata profiling along gene and species trees"
biorxiv.org/content/10.1...
Interactive viz of large trees + custom traits, MSA, domain architectures, functional terms & more + summary of features at internal nodes.
June 19, 2025 at 11:00 AM
Reposted by Ziqi DENG
Pre-registration is now open for our second (free) course on phylogenomic data analysis and visualization using ETE, funded by @cziscience.bsky.social

First time to cover new ETE4 features: Interactive viz of huge tree, profiling...

In Madrid, April 21-25. Travel fellowships available!
March 6, 2025 at 3:32 PM