Dedecker Lab
@dedeckerlab.bsky.social
We work on the development of “smart” fluorescent probes, improving fluorescence imaging, biosensors and image analysis software. Account managed by lab members. More on https://peterdedecker.be/.
New preprint! Our work together with @agtebo.bsky.social : our 'NanoBlocks' strategy to generate fluorescent biosensors from binders such as nanobodies. Proof-of-concept sensors with ALFA nanobody & Erbin PDZ domain shows the concept in vitro, in cells, and for FACS.
www.biorxiv.org/cgi/content/...
www.biorxiv.org/cgi/content/...
NanoBlocks: creating fluorescent biosensors from affinity binders using competitive binding
Genetically-encoded fluorescent biosensors have revolutionized our understanding of complex systems by permitting the in situ observation of chemical activities. However, only a comparatively small se...
www.biorxiv.org
October 29, 2025 at 1:33 PM
New preprint! Our work together with @agtebo.bsky.social : our 'NanoBlocks' strategy to generate fluorescent biosensors from binders such as nanobodies. Proof-of-concept sensors with ALFA nanobody & Erbin PDZ domain shows the concept in vitro, in cells, and for FACS.
www.biorxiv.org/cgi/content/...
www.biorxiv.org/cgi/content/...
Reposted by Dedecker Lab
Teaching an old bacterial protein new tricks: Fast, bright and reversible rhodamine tags for live-cell imaging:
www.biorxiv.org/content/10.1...
Congratulations to Julian Kompa and the entire team.
www.biorxiv.org/content/10.1...
Congratulations to Julian Kompa and the entire team.
Fast, Bright and Reversible Rhodamine Tags for Live-Cell Imaging
We present Rho-tag and SiR-tag, engineered protein tags derived from bacterial multidrug-resistance proteins that bind unsubstituted (silicon-) rhodamines with nanomolar affinity, enabling fast, rever...
www.biorxiv.org
July 9, 2025 at 7:58 PM
Teaching an old bacterial protein new tricks: Fast, bright and reversible rhodamine tags for live-cell imaging:
www.biorxiv.org/content/10.1...
Congratulations to Julian Kompa and the entire team.
www.biorxiv.org/content/10.1...
Congratulations to Julian Kompa and the entire team.
Reposted by Dedecker Lab
We are at Innovative Imaging for 3D Cell Biology Conference in #Utrecht.
Come to talk to us! 😉
conference.imagine-microscopy.nl/programme
Come to talk to us! 😉
conference.imagine-microscopy.nl/programme
June 17, 2025 at 4:45 PM
We are at Innovative Imaging for 3D Cell Biology Conference in #Utrecht.
Come to talk to us! 😉
conference.imagine-microscopy.nl/programme
Come to talk to us! 😉
conference.imagine-microscopy.nl/programme
We are at Innovative Imaging for 3D Cell Biology Conference in #Utrecht.
Come to talk to us! 😉
conference.imagine-microscopy.nl/programme
Come to talk to us! 😉
conference.imagine-microscopy.nl/programme
June 17, 2025 at 4:45 PM
We are at Innovative Imaging for 3D Cell Biology Conference in #Utrecht.
Come to talk to us! 😉
conference.imagine-microscopy.nl/programme
Come to talk to us! 😉
conference.imagine-microscopy.nl/programme
It was 3D Fluorescence Imaging Inauguration Day today! 🥳
Together with the lab of Wim Vandenberg, we organized a launch event of two advanced custom-built 3D fluorescence microscopes! 🔬
🔺Triscan: by @robinvde.bsky.social (tinyurl.com/5t3r6x6k)
🔺Single-Objective Light-Sheet (SOLS) by Sergey Abakumov
Together with the lab of Wim Vandenberg, we organized a launch event of two advanced custom-built 3D fluorescence microscopes! 🔬
🔺Triscan: by @robinvde.bsky.social (tinyurl.com/5t3r6x6k)
🔺Single-Objective Light-Sheet (SOLS) by Sergey Abakumov
April 23, 2025 at 3:03 PM
It was 3D Fluorescence Imaging Inauguration Day today! 🥳
Together with the lab of Wim Vandenberg, we organized a launch event of two advanced custom-built 3D fluorescence microscopes! 🔬
🔺Triscan: by @robinvde.bsky.social (tinyurl.com/5t3r6x6k)
🔺Single-Objective Light-Sheet (SOLS) by Sergey Abakumov
Together with the lab of Wim Vandenberg, we organized a launch event of two advanced custom-built 3D fluorescence microscopes! 🔬
🔺Triscan: by @robinvde.bsky.social (tinyurl.com/5t3r6x6k)
🔺Single-Objective Light-Sheet (SOLS) by Sergey Abakumov
Reposted by Dedecker Lab
🚨 Join us in shaping the future of #SmartMicroscopy! We're hiring PhD & fellowship positions at the intersection of #photonics, electronics & #AI.
Check out our works in this field
doi.org/10.1038/s414...
www.nature.com/articles/s41...
doi.org/10.1101/2024...
Please share!
#SPADarray #Microscopy
Check out our works in this field
doi.org/10.1038/s414...
www.nature.com/articles/s41...
doi.org/10.1101/2024...
Please share!
#SPADarray #Microscopy
April 23, 2025 at 9:12 AM
🚨 Join us in shaping the future of #SmartMicroscopy! We're hiring PhD & fellowship positions at the intersection of #photonics, electronics & #AI.
Check out our works in this field
doi.org/10.1038/s414...
www.nature.com/articles/s41...
doi.org/10.1101/2024...
Please share!
#SPADarray #Microscopy
Check out our works in this field
doi.org/10.1038/s414...
www.nature.com/articles/s41...
doi.org/10.1101/2024...
Please share!
#SPADarray #Microscopy
Reposted by Dedecker Lab
We are looking for a doctoral candidate to join the lab! If you are interested in working with human breast tissue samples straight from the clinic and do not fear large data sets, this might just be your dream project ☺️ Apply now ⬇️
ats.talentadore.com/apply/vaitos...
📸 @oonapaavolainen.bsky.social
ats.talentadore.com/apply/vaitos...
📸 @oonapaavolainen.bsky.social
March 20, 2025 at 2:04 PM
We are looking for a doctoral candidate to join the lab! If you are interested in working with human breast tissue samples straight from the clinic and do not fear large data sets, this might just be your dream project ☺️ Apply now ⬇️
ats.talentadore.com/apply/vaitos...
📸 @oonapaavolainen.bsky.social
ats.talentadore.com/apply/vaitos...
📸 @oonapaavolainen.bsky.social
Reposted by Dedecker Lab
Call for a Post-Doctoral position
The I2M, Physical Acoustics Department is offering a position for a post doctoral researcher as part of an interdisciplinary project funded by @univbordeaux.bsky.social .
👉 www.u-bordeaux.fr/universite/t...
@gdr-imabio-ysn.bsky.social
The I2M, Physical Acoustics Department is offering a position for a post doctoral researcher as part of an interdisciplinary project funded by @univbordeaux.bsky.social .
👉 www.u-bordeaux.fr/universite/t...
@gdr-imabio-ysn.bsky.social
Post-doctoral position in ultrafast laser opto-acoustics
Université de Bordeaux
www.u-bordeaux.fr
February 25, 2025 at 2:44 PM
Call for a Post-Doctoral position
The I2M, Physical Acoustics Department is offering a position for a post doctoral researcher as part of an interdisciplinary project funded by @univbordeaux.bsky.social .
👉 www.u-bordeaux.fr/universite/t...
@gdr-imabio-ysn.bsky.social
The I2M, Physical Acoustics Department is offering a position for a post doctoral researcher as part of an interdisciplinary project funded by @univbordeaux.bsky.social .
👉 www.u-bordeaux.fr/universite/t...
@gdr-imabio-ysn.bsky.social
Reposted by Dedecker Lab
It is my first Bluesky post: I am thrilled that our work on MemGraft probes for “permanent” fluorescent labelling of plasma membranes is finally out in JACS Au! We established a concept of lipid-directed covalent labeling of plasma membranes. Open access article:
pubs.acs.org/doi/10.1021/...
pubs.acs.org/doi/10.1021/...
February 14, 2025 at 6:47 AM
It is my first Bluesky post: I am thrilled that our work on MemGraft probes for “permanent” fluorescent labelling of plasma membranes is finally out in JACS Au! We established a concept of lipid-directed covalent labeling of plasma membranes. Open access article:
pubs.acs.org/doi/10.1021/...
pubs.acs.org/doi/10.1021/...
We are very happy that Solène Lefebvre was awarded #MSCA Postdoc Fellowship to work in our lab! 🥳🎉
Congratz, great to have you!
Results 2024 call: tinyurl.com/5n972ks4
#fellowship #noteasy #postdoc
Congratz, great to have you!
Results 2024 call: tinyurl.com/5n972ks4
#fellowship #noteasy #postdoc
February 14, 2025 at 12:24 PM
We are very happy that Solène Lefebvre was awarded #MSCA Postdoc Fellowship to work in our lab! 🥳🎉
Congratz, great to have you!
Results 2024 call: tinyurl.com/5n972ks4
#fellowship #noteasy #postdoc
Congratz, great to have you!
Results 2024 call: tinyurl.com/5n972ks4
#fellowship #noteasy #postdoc
Reposted by Dedecker Lab
We have a PhD position open in our group! Interested in microscopy and want to help the design of better biomaterials for therapeutic applications? Come join us! Great collaboration with the Voets group at TU/e!
jobs.tue.nl/en/vacancy/p...
jobs.tue.nl/en/vacancy/p...
PhD on high-throughput and super-resolution imaging of polymeric nanoparticles
The TU/e is constantly looking for scientific and non-scientific staff further its ambitions. View here our current vacancies.
jobs.tue.nl
January 28, 2025 at 11:22 AM
We have a PhD position open in our group! Interested in microscopy and want to help the design of better biomaterials for therapeutic applications? Come join us! Great collaboration with the Voets group at TU/e!
jobs.tue.nl/en/vacancy/p...
jobs.tue.nl/en/vacancy/p...
Reposted by Dedecker Lab
#MiFoBio2025
The autumn microscopy school by @gdrimabio.bsky.social will take place from 10th to 16th October 2025.
The call for workshops to share pratical knowledges is open till 31/01 ateliers-mifobio.fr
We'll bring stuff as usual, stay tuned !
More information 👉 linktr.ee/gdrimabio
The autumn microscopy school by @gdrimabio.bsky.social will take place from 10th to 16th October 2025.
The call for workshops to share pratical knowledges is open till 31/01 ateliers-mifobio.fr
We'll bring stuff as usual, stay tuned !
More information 👉 linktr.ee/gdrimabio
January 20, 2025 at 11:26 AM
#MiFoBio2025
The autumn microscopy school by @gdrimabio.bsky.social will take place from 10th to 16th October 2025.
The call for workshops to share pratical knowledges is open till 31/01 ateliers-mifobio.fr
We'll bring stuff as usual, stay tuned !
More information 👉 linktr.ee/gdrimabio
The autumn microscopy school by @gdrimabio.bsky.social will take place from 10th to 16th October 2025.
The call for workshops to share pratical knowledges is open till 31/01 ateliers-mifobio.fr
We'll bring stuff as usual, stay tuned !
More information 👉 linktr.ee/gdrimabio
For our annual Project Design Contest - postdoc, the winner is Solène Lefebvre with "STaRS = Smart Targeting and Release System" to improve drug delivery and development process.
Congratulations! 🥳🏆
#winner
#projectdesign
Congratulations! 🥳🏆
#winner
#projectdesign
January 20, 2025 at 10:54 AM
For our annual Project Design Contest - postdoc, the winner is Solène Lefebvre with "STaRS = Smart Targeting and Release System" to improve drug delivery and development process.
Congratulations! 🥳🏆
#winner
#projectdesign
Congratulations! 🥳🏆
#winner
#projectdesign
Reposted by Dedecker Lab
Although @ritastrack.bsky.social has publicly declared that Superresolution Optical Imaging (SOFI) is dead 🤓 I am happy to share our newest review about it rdcu.be/d52ak
Super-resolution optical fluctuation imaging
Nature Photonics - The authors present a review of super-resolution optical fluctuation imaging (SOFI), including its core working principle, recent advances and remaining challenges.
rdcu.be
January 12, 2025 at 5:47 PM
Although @ritastrack.bsky.social has publicly declared that Superresolution Optical Imaging (SOFI) is dead 🤓 I am happy to share our newest review about it rdcu.be/d52ak
Silke Denis is the winner of our annual Project Design Contest - PhD, with her “FPpace” project for fast continuous directed evolution of fluorescent proteins! 🏆
Congrats! 🥳
#winner
#projectdesign
Congrats! 🥳
#winner
#projectdesign
January 13, 2025 at 10:42 AM
Silke Denis is the winner of our annual Project Design Contest - PhD, with her “FPpace” project for fast continuous directed evolution of fluorescent proteins! 🏆
Congrats! 🥳
#winner
#projectdesign
Congrats! 🥳
#winner
#projectdesign
Reposted by Dedecker Lab
Interested in a single molecule bacteriology PhD?
Deadline 16th Jan. Location Warwick, UK
Broad topic is the physical biology of the bacterial cell wall. Could suit almost any scientific background, eg biology, physics, biochemistry, chemistry, computer science.
www.findaphd.com/phds/project...
Deadline 16th Jan. Location Warwick, UK
Broad topic is the physical biology of the bacterial cell wall. Could suit almost any scientific background, eg biology, physics, biochemistry, chemistry, computer science.
www.findaphd.com/phds/project...
Single molecule biology of bacterial cell wall remodelling at University of Warwick on FindAPhD.com
PhD Project - Single molecule biology of bacterial cell wall remodelling at University of Warwick, listed on FindAPhD.com
www.findaphd.com
January 7, 2025 at 12:19 PM
Interested in a single molecule bacteriology PhD?
Deadline 16th Jan. Location Warwick, UK
Broad topic is the physical biology of the bacterial cell wall. Could suit almost any scientific background, eg biology, physics, biochemistry, chemistry, computer science.
www.findaphd.com/phds/project...
Deadline 16th Jan. Location Warwick, UK
Broad topic is the physical biology of the bacterial cell wall. Could suit almost any scientific background, eg biology, physics, biochemistry, chemistry, computer science.
www.findaphd.com/phds/project...
Reposted by Dedecker Lab
Applications are *OPEN* for our Early Career Award Competition 2025! @rmsearlycareer.bsky.social
Great opportunity to receive recognition for your work in #microscopy, #Imaging or #FlowCytometry
Shortlisted entrants will be invited to the final at #mmc2025
Enter now: rms.org.uk/opportunitie...
Great opportunity to receive recognition for your work in #microscopy, #Imaging or #FlowCytometry
Shortlisted entrants will be invited to the final at #mmc2025
Enter now: rms.org.uk/opportunitie...
December 17, 2024 at 10:57 AM
Applications are *OPEN* for our Early Career Award Competition 2025! @rmsearlycareer.bsky.social
Great opportunity to receive recognition for your work in #microscopy, #Imaging or #FlowCytometry
Shortlisted entrants will be invited to the final at #mmc2025
Enter now: rms.org.uk/opportunitie...
Great opportunity to receive recognition for your work in #microscopy, #Imaging or #FlowCytometry
Shortlisted entrants will be invited to the final at #mmc2025
Enter now: rms.org.uk/opportunitie...
Big congratulations to our postdoc Robin for being awarded the Science and Innovation Award from the KU Leuven Faculty of Science! 🥳
Well-deserved, not only for work on the TriScan and the Circulator;)
@robinvde.bsky.social
#scienceaward
Picture courtesy: The Image Zone, Johan Van Droogenbroeck.
Well-deserved, not only for work on the TriScan and the Circulator;)
@robinvde.bsky.social
#scienceaward
Picture courtesy: The Image Zone, Johan Van Droogenbroeck.
December 10, 2024 at 10:30 AM
Big congratulations to our postdoc Robin for being awarded the Science and Innovation Award from the KU Leuven Faculty of Science! 🥳
Well-deserved, not only for work on the TriScan and the Circulator;)
@robinvde.bsky.social
#scienceaward
Picture courtesy: The Image Zone, Johan Van Droogenbroeck.
Well-deserved, not only for work on the TriScan and the Circulator;)
@robinvde.bsky.social
#scienceaward
Picture courtesy: The Image Zone, Johan Van Droogenbroeck.
Reposted by Dedecker Lab
Curious what we do in my new lab at D-CHAB @ethzurich.bsky.social 🔬⚗️? Save the date for my inaugural lecture on April 3, 2025 and if you can’t wait to know more check out the news article and the associated video. chab.ethz.ch/en/news-and-...
December 5, 2024 at 12:05 PM
Curious what we do in my new lab at D-CHAB @ethzurich.bsky.social 🔬⚗️? Save the date for my inaugural lecture on April 3, 2025 and if you can’t wait to know more check out the news article and the associated video. chab.ethz.ch/en/news-and-...
Happy fluo Sinterklaas to everyone! 🙂🥳
mOrange, mScarlet and mCitrine in bacteria
... and mOranges to eat.
#fluorescence
#sinterklaas
mOrange, mScarlet and mCitrine in bacteria
... and mOranges to eat.
#fluorescence
#sinterklaas
December 5, 2024 at 11:14 AM
Happy fluo Sinterklaas to everyone! 🙂🥳
mOrange, mScarlet and mCitrine in bacteria
... and mOranges to eat.
#fluorescence
#sinterklaas
mOrange, mScarlet and mCitrine in bacteria
... and mOranges to eat.
#fluorescence
#sinterklaas
Reposted by Dedecker Lab
Ph.D. student Dazhou Cheng developed a chemigenetic K+ indicator (HaloKBP), using an rHCaMP/HaloCaMP-type design! pubs.acs.org/doi/10.1021/...
High-Performance Chemigenetic Potassium Ion Indicator
Potassium ion (K+) is the most abundant metal ion in cells and plays an indispensable role in practically all biological systems. Although there have been reports of both synthetic and genetically encoded fluorescent K+ indicators, there remains a need for an indicator that is genetically targetable, has high specificity for K+ versus Na+, and has a high fluorescent response in the red to far-red wavelength range. Here, we introduce a series of chemigenetic K+ indicators, designated as the HaloKbp1 series, based on the bacterial K+-binding protein (Kbp) inserted into HaloTag7 self-labeled with environmentally sensitive rhodamine derivatives. This series of high-performance indicators features high brightness in the red to far-red region, large intensiometric fluorescence changes, and a range of Kd values. We demonstrate that they are suitable for the detection of physiologically relevant K+ concentration changes such as those that result from the Ca2+-dependent activation of the BK potassium channel.
pubs.acs.org
December 5, 2024 at 9:46 AM
Ph.D. student Dazhou Cheng developed a chemigenetic K+ indicator (HaloKBP), using an rHCaMP/HaloCaMP-type design! pubs.acs.org/doi/10.1021/...
Reposted by Dedecker Lab
It is official! The fourth edidtion of our winter school on "Fluorescence markers for advanced microscopy" will take place on March 15-20 2026 in Les Houches, in the french Alps.
fluorescenceleshouches.wordpress.com
Selection of participants will start in 2025. Signup on the website to be informed.
fluorescenceleshouches.wordpress.com
Selection of participants will start in 2025. Signup on the website to be informed.
November 21, 2024 at 8:22 AM
It is official! The fourth edidtion of our winter school on "Fluorescence markers for advanced microscopy" will take place on March 15-20 2026 in Les Houches, in the french Alps.
fluorescenceleshouches.wordpress.com
Selection of participants will start in 2025. Signup on the website to be informed.
fluorescenceleshouches.wordpress.com
Selection of participants will start in 2025. Signup on the website to be informed.
🚨Recently, we also published the 'Resonator',
which provides quasi-simultaneous fluorescence imaging with multiple excitation wavelengths:
Check it out: 👇https://pubs.acs.org/doi/10.1021/acs.nanolett.4c00258
which provides quasi-simultaneous fluorescence imaging with multiple excitation wavelengths:
Check it out: 👇https://pubs.acs.org/doi/10.1021/acs.nanolett.4c00258
November 18, 2024 at 2:17 PM
🚨Recently, we also published the 'Resonator',
which provides quasi-simultaneous fluorescence imaging with multiple excitation wavelengths:
Check it out: 👇https://pubs.acs.org/doi/10.1021/acs.nanolett.4c00258
which provides quasi-simultaneous fluorescence imaging with multiple excitation wavelengths:
Check it out: 👇https://pubs.acs.org/doi/10.1021/acs.nanolett.4c00258
Very happy to share the 'Circulator' paper, which is now out in @naturemethods ! 🥳
👉https://rdcu.be/dTa4v
Together with @vandenberglab! https://twitter.com/naturemethods/status/1832095358425436636
👉https://rdcu.be/dTa4v
Together with @vandenberglab! https://twitter.com/naturemethods/status/1832095358425436636
November 18, 2024 at 2:17 PM
Very happy to share the 'Circulator' paper, which is now out in @naturemethods ! 🥳
👉https://rdcu.be/dTa4v
Together with @vandenberglab! https://twitter.com/naturemethods/status/1832095358425436636
👉https://rdcu.be/dTa4v
Together with @vandenberglab! https://twitter.com/naturemethods/status/1832095358425436636
Leuven Advanced Microscopy Symposium 2024 was great ! 🔬💫
Thanks to you !
#LAMS2024 @stiel_lab @VoschLab @vandenberglab @Bodeeen1 @JamesDManton @LazarLab @mueller_physics @wmarkbates @michellefrei13 @SusanSuperRes @Fluo_renzo @LReinkensmeier @huserlab @NielsRadmacher
Thanks to you !
#LAMS2024 @stiel_lab @VoschLab @vandenberglab @Bodeeen1 @JamesDManton @LazarLab @mueller_physics @wmarkbates @michellefrei13 @SusanSuperRes @Fluo_renzo @LReinkensmeier @huserlab @NielsRadmacher
November 18, 2024 at 2:17 PM
Leuven Advanced Microscopy Symposium 2024 was great ! 🔬💫
Thanks to you !
#LAMS2024 @stiel_lab @VoschLab @vandenberglab @Bodeeen1 @JamesDManton @LazarLab @mueller_physics @wmarkbates @michellefrei13 @SusanSuperRes @Fluo_renzo @LReinkensmeier @huserlab @NielsRadmacher
Thanks to you !
#LAMS2024 @stiel_lab @VoschLab @vandenberglab @Bodeeen1 @JamesDManton @LazarLab @mueller_physics @wmarkbates @michellefrei13 @SusanSuperRes @Fluo_renzo @LReinkensmeier @huserlab @NielsRadmacher