Danial
@danialgh.bsky.social
PharmD student, in love with CS, exploring computational biology, research associate at http://Neurosnap.ai
Pinned
Danial
@danialgh.bsky.social
· Jun 10
Hi everyone! I’m looking to join academic labs remotely to collaborate and discuss ideas in structural biology, focusing on computational protein design. I have relevant experience and can share details. Please DM me with any opportunities!
1/
working on multi-objective protein design made it clear there’s rarely a “best” sequence.
improving one property often hurts another.
working on multi-objective protein design made it clear there’s rarely a “best” sequence.
improving one property often hurts another.
July 7, 2025 at 8:16 PM
1/
working on multi-objective protein design made it clear there’s rarely a “best” sequence.
improving one property often hurts another.
working on multi-objective protein design made it clear there’s rarely a “best” sequence.
improving one property often hurts another.
Reposted by Danial
Hard to remember that just 12 years ago there was no @biorxivpreprint.bsky.social and almost no one in the biology community preprinted their work. What a long way we’ve come. @reinierprosee.bsky.social and I wrote a thing about how @biologists.bsky.social embraced the preprint world
Staying ahead of the curve: a decade of preprints in biology
When Cold Spring Harbor Laboratory announced the launch of bioRxiv in November 2013, only the braver or more radical amongst us would have predicted that it heralded a lasting change within the scienc...
journals.biologists.com
July 1, 2025 at 6:41 PM
Hard to remember that just 12 years ago there was no @biorxivpreprint.bsky.social and almost no one in the biology community preprinted their work. What a long way we’ve come. @reinierprosee.bsky.social and I wrote a thing about how @biologists.bsky.social embraced the preprint world
Hi everyone! I’m looking to join academic labs remotely to collaborate and discuss ideas in structural biology, focusing on computational protein design. I have relevant experience and can share details. Please DM me with any opportunities!
June 10, 2025 at 1:38 PM
Hi everyone! I’m looking to join academic labs remotely to collaborate and discuss ideas in structural biology, focusing on computational protein design. I have relevant experience and can share details. Please DM me with any opportunities!
Learn how to cluster proteins by structure with methods like RMSD and TM-score for comparing 3D shapes. My latest post: neurosnap.ai/blog/post/cl... #bioinformatics
Clustering Proteins by Structure — The Ultimate Guide
Explore structural protein clustering with ClusterProt and Kluster tools that classify proteins by their 3D structure. Discover applications in functional prediction, mutation analysis, and protein en...
neurosnap.ai
March 7, 2025 at 9:06 AM
Learn how to cluster proteins by structure with methods like RMSD and TM-score for comparing 3D shapes. My latest post: neurosnap.ai/blog/post/cl... #bioinformatics
Had trouble getting predicted protein structures to work with DSSP and StrucTFactor, so I wrote a simple C program to handle it. If you’re facing the same issue, here’s the code: github.com/Danialgharai...)
Hope it’s useful!
#MolecularBiology
Hope it’s useful!
#MolecularBiology
GitHub - Danialgharaie/DSSP-Pre: A Simple Program For Making Predicted Protein Structures Compatible With DSSP
A Simple Program For Making Predicted Protein Structures Compatible With DSSP - Danialgharaie/DSSP-Pre
github.com
December 12, 2024 at 9:57 PM
Had trouble getting predicted protein structures to work with DSSP and StrucTFactor, so I wrote a simple C program to handle it. If you’re facing the same issue, here’s the code: github.com/Danialgharai...)
Hope it’s useful!
#MolecularBiology
Hope it’s useful!
#MolecularBiology
Reposted by Danial
Had some fun with Boltz!
November 28, 2024 at 11:59 PM
Had some fun with Boltz!
🚀 Just published a new blog post on Chai-1: an open alternative to AlphaFold3 for commercial molecular modeling!
🔗 Read more: neurosnap.ai/blog/post/in...
#MolecularModeling #Chai1 #AlphaFold3 #DrugDiscovery #Neurosnap #AI #Biotech
🔗 Read more: neurosnap.ai/blog/post/in...
#MolecularModeling #Chai1 #AlphaFold3 #DrugDiscovery #Neurosnap #AI #Biotech
Introducing Chai-1: A Commercial Alternative to AlphaFold3
Chai-1 is a powerful molecular structure prediction model, now available through Neurosnap for commercial use. Learn how Chai-1 rivals AlphaFold3 in accuracy while offering more flexible access for re...
neurosnap.ai
November 28, 2024 at 9:33 AM
🚀 Just published a new blog post on Chai-1: an open alternative to AlphaFold3 for commercial molecular modeling!
🔗 Read more: neurosnap.ai/blog/post/in...
#MolecularModeling #Chai1 #AlphaFold3 #DrugDiscovery #Neurosnap #AI #Biotech
🔗 Read more: neurosnap.ai/blog/post/in...
#MolecularModeling #Chai1 #AlphaFold3 #DrugDiscovery #Neurosnap #AI #Biotech