Christophe Klopp
@cklopp66.bsky.social
Chef de projet en bioinformatique.
Intéressé par l'assemblage et l'annotation de génomes
Intéressé par l'assemblage et l'annotation de génomes
dgenies.toulouse.inra.fr monthly jobs by job size. Interesting to see that the 5 to 200Mb genome sizes are less represented in the queries.
June 4, 2025 at 9:01 AM
dgenies.toulouse.inra.fr monthly jobs by job size. Interesting to see that the 5 to 200Mb genome sizes are less represented in the queries.
You need help to select the best genome assembler? Check the updated version of www.biorxiv.org/content/10.1...
Benchmarking long-read genome assemblers for three sequencing protocols and three agricultural species
Today, long read technologies make it possible to produce telomere-to-telomere genome assemblies. These assemblies permit more accurate whole genome analyses, including on repeated regions. The genome...
www.biorxiv.org
April 23, 2025 at 5:23 PM
You need help to select the best genome assembler? Check the updated version of www.biorxiv.org/content/10.1...
Happy to share our latest preprint on autopolyploid genome assembly www.biorxiv.org/content/10.1...
Improving hifiasm haplotypes for autopolyploid genome assemblies using constraint programming
Actual versions of hifiasm often produce unbalanced haplotype contigs for autopolyploid genome assemblies. Adding a contraint on the distribution of proteins among haplotypes improves haplotype sizes ...
www.biorxiv.org
April 8, 2025 at 5:32 AM
Happy to share our latest preprint on autopolyploid genome assembly www.biorxiv.org/content/10.1...
Reposted by Christophe Klopp
Vous avez les bases mais souhaitez aller plus loin dans la programmation #Python ? Notre cycle de formation "Bioinformatique par la pratique" propose également ce module avancé à Jouy-en-Josas sur 2 jours (2 et 3 avril). 📝 Inscriptions et programme sur documents.migale.inrae.fr/trainings.html
March 7, 2025 at 12:11 PM
Vous avez les bases mais souhaitez aller plus loin dans la programmation #Python ? Notre cycle de formation "Bioinformatique par la pratique" propose également ce module avancé à Jouy-en-Josas sur 2 jours (2 et 3 avril). 📝 Inscriptions et programme sur documents.migale.inrae.fr/trainings.html
Reposted by Christophe Klopp
