Christine He
@christinehe.bsky.social
Bioinformatics at Oxford Nanopore Technologies 🧬 Microbe enthusiast 🦠 Previously Invitae, One Codex, IGI at UC Berkeley
ONT has a temporary bioinformatics position (8 months) open while I'm on maternity leave. Focus will be on microbial genomics but with opportunities to work on projects across the breadth of genomics!
ejnh.fa.em2.oraclecloud.com/hcmUI/Candid...
ejnh.fa.em2.oraclecloud.com/hcmUI/Candid...
Applications Bioinformatician (8 month temporary role)
We are looking for an individual with expertise in bioinformatics and data analysis, specializing in microbial genomics and metagenomics, to join our Applications team as an Applications Bioinformatic...
ejnh.fa.em2.oraclecloud.com
August 27, 2025 at 7:04 PM
ONT has a temporary bioinformatics position (8 months) open while I'm on maternity leave. Focus will be on microbial genomics but with opportunities to work on projects across the breadth of genomics!
ejnh.fa.em2.oraclecloud.com/hcmUI/Candid...
ejnh.fa.em2.oraclecloud.com/hcmUI/Candid...
An ONT webinar where I discuss wet and dry lab methods for environmental metagenomics, as well as analysis of 1.5 Tb (!!) of metagenomic sequencing from compost. Featuring the nanoMDBG assembler, strain-dependent AMR profiles, and invertons:
www.youtube.com/watch?v=OZ4P...
www.youtube.com/watch?v=OZ4P...
Exploring Oxford Nanopore sequencing methods for environmental samples
YouTube video by Oxford Nanopore Technologies
www.youtube.com
July 17, 2025 at 7:24 PM
An ONT webinar where I discuss wet and dry lab methods for environmental metagenomics, as well as analysis of 1.5 Tb (!!) of metagenomic sequencing from compost. Featuring the nanoMDBG assembler, strain-dependent AMR profiles, and invertons:
www.youtube.com/watch?v=OZ4P...
www.youtube.com/watch?v=OZ4P...
Our guide for best practices in metagenomic assembly and binning of @nanoporetech.com data, highlighting some exciting recently developed tools for high accuracy long reads
Check out our new Apps Note on metagenomic assembly of the Zymo fecal reference with nanopore sequencing and metaMDBG. Almost 200 Gb of metagenomic sequence data from a single PromethION flowcell, yeilding hundreds of high-quality metagenome assembled genomes: nanoporetech.com/resource-cen...
Application note: Oxford Nanopore sequencing provides superior MAG recovery and strain-level resolution from a complex microbiome | Oxford Nanopore Technologies
In this application note, we demonstrate the
capabilities of Oxford Nanopore metagenomics by
sequencing and analysing the well-characterised
ZymoBIOMICS Fecal Reference.
nanoporetech.com
January 21, 2025 at 9:26 PM
Our guide for best practices in metagenomic assembly and binning of @nanoporetech.com data, highlighting some exciting recently developed tools for high accuracy long reads
Reposted by Christine He
NCBI's Taxonomy changes over time. We built Taxonomy Time Machine to track these changes:
🕰️ app: taxonomy.onecodex.com
📄 pre-print: www.biorxiv.org/content/10.1...
🕰️ app: taxonomy.onecodex.com
📄 pre-print: www.biorxiv.org/content/10.1...
December 13, 2024 at 5:29 PM
NCBI's Taxonomy changes over time. We built Taxonomy Time Machine to track these changes:
🕰️ app: taxonomy.onecodex.com
📄 pre-print: www.biorxiv.org/content/10.1...
🕰️ app: taxonomy.onecodex.com
📄 pre-print: www.biorxiv.org/content/10.1...