Burstein lab
@bursteinlab.bsky.social
Having fun with microbial genomics and machine learning
Pinned
Burstein lab
@bursteinlab.bsky.social
· Jun 7
1/6 🧬📊 Curious about the buzz around NLP in biology? Feeling overwhelmed by the rapid developments? We've got you covered! Our review on NLP applications in genomics, by the wonderful Ella Rannon, is now out as a pre-print! #NLP #Bioinformatics arxiv.org/abs/2506.02212
🧬 New preprint alert!
Protein language models have transformed biology - but what about the tokens they read?
In our new preprint, 👑@EllaRannon👑 studies how tokenization choices shape pLM performance and efficiency. 🧵 (1/5)
www.biorxiv.org/content/10.6...
Protein language models have transformed biology - but what about the tokens they read?
In our new preprint, 👑@EllaRannon👑 studies how tokenization choices shape pLM performance and efficiency. 🧵 (1/5)
www.biorxiv.org/content/10.6...
www.biorxiv.org
February 16, 2026 at 3:00 AM
🧬 New preprint alert!
Protein language models have transformed biology - but what about the tokens they read?
In our new preprint, 👑@EllaRannon👑 studies how tokenization choices shape pLM performance and efficiency. 🧵 (1/5)
www.biorxiv.org/content/10.6...
Protein language models have transformed biology - but what about the tokens they read?
In our new preprint, 👑@EllaRannon👑 studies how tokenization choices shape pLM performance and efficiency. 🧵 (1/5)
www.biorxiv.org/content/10.6...
1/4 Ever wanted to predict bacterial protein-protein interactions (PPI) on a large scale?
We wanted to, but realized there’s no such algorithm that is both rapid and optimized for bacterial protein analysis.
This led our ⭐️Chen Agassy⭐️ to develop B-PPI: doi.org/10.64898/202...
We wanted to, but realized there’s no such algorithm that is both rapid and optimized for bacterial protein analysis.
This led our ⭐️Chen Agassy⭐️ to develop B-PPI: doi.org/10.64898/202...
January 7, 2026 at 9:15 AM
1/4 Ever wanted to predict bacterial protein-protein interactions (PPI) on a large scale?
We wanted to, but realized there’s no such algorithm that is both rapid and optimized for bacterial protein analysis.
This led our ⭐️Chen Agassy⭐️ to develop B-PPI: doi.org/10.64898/202...
We wanted to, but realized there’s no such algorithm that is both rapid and optimized for bacterial protein analysis.
This led our ⭐️Chen Agassy⭐️ to develop B-PPI: doi.org/10.64898/202...
1/6 🧬📊 Curious about the buzz around NLP in biology? Feeling overwhelmed by the rapid developments? We've got you covered! Our review on NLP applications in genomics, by the wonderful Ella Rannon, is now out as a pre-print! #NLP #Bioinformatics arxiv.org/abs/2506.02212
June 7, 2025 at 12:47 PM
1/6 🧬📊 Curious about the buzz around NLP in biology? Feeling overwhelmed by the rapid developments? We've got you covered! Our review on NLP applications in genomics, by the wonderful Ella Rannon, is now out as a pre-print! #NLP #Bioinformatics arxiv.org/abs/2506.02212
Hello Bluesky! Burstein lab just joined - are we too late for the party 👀 ??
June 7, 2025 at 12:40 PM
Hello Bluesky! Burstein lab just joined - are we too late for the party 👀 ??