Boston Protein Design and Modeling Club
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bpdmc.org
Boston Protein Design and Modeling Club
@bpdmc.org
890 followers 33 following 44 posts
We are a global community of computational protein engineers and modelers from both academia and industry.

An @omsf.io project organized by @cdbahl.com, @sokrypton.org, and @nickpolizzi.bsky.social

https://bpdmc.org
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bpdmc.org
Happy New Year! We've got an exciting seminar to kick off 2026

Wednesday, January 21st at 7pm EST
Room 181, Building 68 @mit.edu

speaker: Erik Swanson and Mike Nichols

"mBER: Controllable de novo antibody design with million-scale experimental screening"

bpdmc.org
schedule
introduction and membership Boston Protein Design and Modeling Club (BPDMC) is a community of computational protein engineers and modelers from both academia and industry. While we are based in Boston...
bpdmc.org
January 3, 2026 at 3:59 PM
bpdmc.org
If you couldn't make it for @yehlincho.bsky.social's rockstar seminar last night, have no fear because you can check out the recording 👇
youtu.be/yCOlC_yj4kc
How AF3-Style Structure Prediction Models Can Be Used for Design: BoltzDesign and Protein Hunter
YouTube video by Boston Protein Design and Modeling Club
youtu.be
December 11, 2025 at 2:13 PM
bpdmc.org
quick reminder to join us tonight for our final meeting of 2025 - it's going to be a great seminar by @yehlincho.bsky.social that you won't want to miss!
bpdmc.org Boston Protein Design and Modeling Club @bpdmc.org · Dec 5
Join us Wednesday December 10th for an amazing seminar by @yehlincho.bsky.social to cap off 2025. See you at 7pm EST in Room 6055, Longwood Center @danafarber.bsky.social

"How AF3-Style Structure Prediction Models Can Be Used for Protein Design: BoltzDesign and Protein Hunter"

bpdmc.org
schedule
introduction and membership Boston Protein Design and Modeling Club (BPDMC) is a community of computational protein engineers and modelers from both academia and industry. While we are based in Boston...
bpdmc.org
December 10, 2025 at 3:29 PM
bpdmc.org
Join us Wednesday December 10th for an amazing seminar by @yehlincho.bsky.social to cap off 2025. See you at 7pm EST in Room 6055, Longwood Center @danafarber.bsky.social

"How AF3-Style Structure Prediction Models Can Be Used for Protein Design: BoltzDesign and Protein Hunter"

bpdmc.org
schedule
introduction and membership Boston Protein Design and Modeling Club (BPDMC) is a community of computational protein engineers and modelers from both academia and industry. While we are based in Boston...
bpdmc.org
December 5, 2025 at 2:28 PM
bpdmc.org
Don't fret if you weren't in the room this week when @ginaelnesr.bsky.social gave her stellar seminar because you can check out the recording 👇
youtu.be/I-utRMS84E8
Learning millisecond protein dynamics from what is missing in NMR spectra
YouTube video by Boston Protein Design and Modeling Club
youtu.be
November 22, 2025 at 1:56 AM
bpdmc.org
quick reminder to join us at DFCI tonight for a spectacular talk by @ginaelnesr.bsky.social!
November 19, 2025 at 4:06 PM
bpdmc.org
We can't wait until Wednesday, November 19th 2025 to arrive because we have @ginaelnesr.bsky.social from @possuhuanglab.bsky.social speaking at 7pm EST in Room 6055, Longwood Center, @danafarber.bsky.social

"Learning millisecond protein dynamics from what is missing in NMR spectra"

bpdmc.org
schedule
introduction and membership Boston Protein Design and Modeling Club (BPDMC) is a community of computational protein engineers and modelers from both academia and industry. While we are based in Boston...
bpdmc.org
November 12, 2025 at 6:18 PM
Reposted by Boston Protein Design and Modeling Club
cdbahl.com
My new @ted.com talk from the main stage just went live!

go.ted.com/chrisbahl

🧵👇
The secret language of cells — and how to "speak" it
What if medicines could "speak" directly to your cells? Protein designer and TED Fellow Chris Bahl introduces a new generation of miniproteins: AI-designed medicines that can deliver detailed instruct...
go.ted.com
November 11, 2025 at 5:06 PM
bpdmc.org
If you missed the amazing seminar by @marinkazitnik.bsky.social last month, the recording is now available! 👇
youtu.be/mkTgopOhSR4
Empowering Biomedical Discovery with “AI Scientists”
YouTube video by Boston Protein Design and Modeling Club
youtu.be
November 3, 2025 at 9:12 PM
bpdmc.org
have no fear if you weren't in the packed lecture hall at @mit.edu last week for @grocklin.bsky.social's brilliant seminar - you can check out the recording 👇
youtu.be/KKXe8a_h88c
Predicting protein folding stability and aggregation propensity using large-scale experiments
YouTube video by Boston Protein Design and Modeling Club
youtu.be
October 27, 2025 at 7:01 PM
bpdmc.org
thanks everyone who packed the house tonight at @mit.edu for an incredible seminar by @grocklin.bsky.social!
October 23, 2025 at 1:38 AM
bpdmc.org
quick reminder to come see @grocklin.bsky.social tonight at @mit.edu!
bpdmc.org Boston Protein Design and Modeling Club @bpdmc.org · Oct 17
Join us in Room 181, Building 68 @mit.edu on October 22nd 2025 @ 7pm EDT to see @grocklin.bsky.social present a mind blowing amount of data and learn what becomes possible at this scale

"Predicting protein folding stability and aggregation propensity using large-scale experiments"

bpdmc.org
schedule
introduction and membership Boston Protein Design and Modeling Club (BPDMC) is a community of computational protein engineers and modelers from both academia and industry. While we are based in Boston...
bpdmc.org
October 22, 2025 at 2:55 PM
bpdmc.org
Join us in Room 181, Building 68 @mit.edu on October 22nd 2025 @ 7pm EDT to see @grocklin.bsky.social present a mind blowing amount of data and learn what becomes possible at this scale

"Predicting protein folding stability and aggregation propensity using large-scale experiments"

bpdmc.org
schedule
introduction and membership Boston Protein Design and Modeling Club (BPDMC) is a community of computational protein engineers and modelers from both academia and industry. While we are based in Boston...
bpdmc.org
October 17, 2025 at 8:27 PM
bpdmc.org
quick reminder to join us at @danafarber.bsky.social tonight for a spectacular seminar by @marinkazitnik.bsky.social!
bpdmc.org Boston Protein Design and Modeling Club @bpdmc.org · Sep 26
Our September seminar was delayed a couple weeks, but our speaker @marinkazitnik.bsky.social is well worth the wait.

Join us this Wednesday, October 1st 2025 at 7pm EDT in Room 6055, Longwood Center, @danafarber.bsky.social

"Empowering Biomedical Discovery with AI Scientists”

bpdmc.org
schedule
introduction and membership Boston Protein Design and Modeling Club (BPDMC) is a community of computational protein engineers and modelers from both academia and industry. While we are based in Boston...
bpdmc.org
October 1, 2025 at 12:35 PM
bpdmc.org
Our September seminar was delayed a couple weeks, but our speaker @marinkazitnik.bsky.social is well worth the wait.

Join us this Wednesday, October 1st 2025 at 7pm EDT in Room 6055, Longwood Center, @danafarber.bsky.social

"Empowering Biomedical Discovery with AI Scientists”

bpdmc.org
schedule
introduction and membership Boston Protein Design and Modeling Club (BPDMC) is a community of computational protein engineers and modelers from both academia and industry. While we are based in Boston...
bpdmc.org
September 26, 2025 at 1:54 PM
bpdmc.org
If you missed seeing @colby.tuple.xyz's excellent talk back in July, you can now check out the recording 👇 youtu.be/k63Xh-oJMs0
Model. Package. Deploy. Repeat: A DevOps Approach to Biomolecular Scalability
YouTube video by Boston Protein Design and Modeling Club
youtu.be
September 9, 2025 at 9:53 PM
bpdmc.org
Have no fear if you weren't in the packed audience this week for @martinpacesa.bsky.social's awesome seminar, because you can check out the recording 👇
youtu.be/qQihl6If9vU
BindCraft: one-shot design of functional protein binders
YouTube video by Boston Protein Design and Modeling Club
youtu.be
August 15, 2025 at 8:56 PM
bpdmc.org
Fun fact: #bindcraft evolved from a binder design tutorial originally developed for BPDMC!

Come see @martinpacesa.bsky.social tonight at 7pm EDT in Room 181, Building 68, @mit.edu

"BindCraft: one-shot design of functional protein binders"

bpdmc.org
schedule
introduction and membership Boston Protein Design and Modeling Club (BPDMC) is a community of computational protein engineers and modelers from both academia and industry. While we are based in Boston...
bpdmc.org
August 13, 2025 at 1:52 PM
bpdmc.org
quick reminder to join us tonight at @harvardmed.bsky.social for a great talk by Colby Ford @colby.tuple.xyz
bpdmc.org Boston Protein Design and Modeling Club @bpdmc.org · Jul 2
Come learn about how to run the computational infrastructure that's powering the protein design revolution

July 9th 2025 at 7pm EDT in TMEC250 @harvardmed.bsky.social

"Model. Package. Deploy. Repeat: A DevOps Approach to Biomolecular Scalability"

Colby Ford @colby.tuple.xyz

bpdmc.org
schedule
introduction and membership Boston Protein Design and Modeling Club (BPDMC) is a community of computational protein engineers and modelers from both academia and industry. While we are based in Boston...
bpdmc.org
July 9, 2025 at 1:01 PM
bpdmc.org
Come learn about how to run the computational infrastructure that's powering the protein design revolution

July 9th 2025 at 7pm EDT in TMEC250 @harvardmed.bsky.social

"Model. Package. Deploy. Repeat: A DevOps Approach to Biomolecular Scalability"

Colby Ford @colby.tuple.xyz

bpdmc.org
schedule
introduction and membership Boston Protein Design and Modeling Club (BPDMC) is a community of computational protein engineers and modelers from both academia and industry. While we are based in Boston...
bpdmc.org
July 2, 2025 at 10:07 PM
bpdmc.org
Don't fret if you missed Silvi Rouskin's brilliant and engaging talk on #RNA structure last night - you can check out the recording 👇
youtu.be/oS_Cb-YMymw
RNA Function, Design, and Modeling
YouTube video by Boston Protein Design and Modeling Club
youtu.be
June 12, 2025 at 4:09 PM
bpdmc.org
Protein isn't the only amazing macromolecule that folds into 3D shapes - come see Silvi Rouskin in Room 181, Building 68 at MIT on Wednesday, June 11th at 7pm EDT to learn more about #RNA structure design and modeling!

"RNA Function, Design, and Modeling"

bpdmc.org
schedule
introduction and membership Boston Protein Design and Modeling Club (BPDMC) is a community of computational protein engineers and modelers from both academia and industry. While we are based in Boston...
bpdmc.org
June 5, 2025 at 1:31 PM
bpdmc.org
If you missed out on Sarel Fleishman's extraordinary talk last night, have no fear - you can check out the recording 👇
youtu.be/2aaWh8yVq8U
Designing new and improved functions in natural protein folds
YouTube video by Boston Protein Design and Modeling Club
youtu.be
May 16, 2025 at 2:34 PM
bpdmc.org
quick reminder to come join us tonight at 7pm EDT to see Sarel Fleishman!
bpdmc.org Boston Protein Design and Modeling Club @bpdmc.org · May 9
Our speaker next week is an amazing scientist from out of town, and this is one that you won't want to miss!

Thursday, May 15th, 7pm EDT
Cannon Room, Building C, @harvardmed.bsky.social

Sarel Fleishman
www.fleishmanlab.org

"Designing new and improved functions in natural protein folds"

bpdmc.org
schedule
introduction and membership Boston Protein Design and Modeling Club (BPDMC) is a community of computational protein engineers and modelers from both academia and industry. While we are based in Boston...
bpdmc.org
May 15, 2025 at 12:31 PM
bpdmc.org
Our speaker next week is an amazing scientist from out of town, and this is one that you won't want to miss!

Thursday, May 15th, 7pm EDT
Cannon Room, Building C, @harvardmed.bsky.social

Sarel Fleishman
www.fleishmanlab.org

"Designing new and improved functions in natural protein folds"

bpdmc.org
schedule
introduction and membership Boston Protein Design and Modeling Club (BPDMC) is a community of computational protein engineers and modelers from both academia and industry. While we are based in Boston...
bpdmc.org
May 9, 2025 at 3:08 PM