BiomarkerKB
@biomarkerkb.bsky.social
An open knowledgebase integrating biomarker data to accelerate discovery, research, and biomedical innovation
https://biomarkerkb.org/
https://biomarkerkb.org/
Excited to share that GlyGen & BiomarkerKB were featured at #SFG2025 Annual Meeting in San Diego, CA!
Cyrus Chun Hong Au Yeung presented on a Large Language Model (LLM)-based Workflow for mining glycan biomarkers and harmonizing the results into BiomarkerKB & GlyGen.
#glycotime #biomarker
Cyrus Chun Hong Au Yeung presented on a Large Language Model (LLM)-based Workflow for mining glycan biomarkers and harmonizing the results into BiomarkerKB & GlyGen.
#glycotime #biomarker
November 18, 2025 at 7:02 PM
Excited to share that GlyGen & BiomarkerKB were featured at #SFG2025 Annual Meeting in San Diego, CA!
Cyrus Chun Hong Au Yeung presented on a Large Language Model (LLM)-based Workflow for mining glycan biomarkers and harmonizing the results into BiomarkerKB & GlyGen.
#glycotime #biomarker
Cyrus Chun Hong Au Yeung presented on a Large Language Model (LLM)-based Workflow for mining glycan biomarkers and harmonizing the results into BiomarkerKB & GlyGen.
#glycotime #biomarker
The BiomarkerKB team attended the CFDE 2025 Fall Meeting (Oct 27–28) in Bethesda, MD.
The team joined discussions on shared data infrastructure, interoperability, and biomarker partnerships, contributing to collaborative efforts driving biomedical discovery.
#CFDE #BiomarkerKB #KnowledgeGraph
The team joined discussions on shared data infrastructure, interoperability, and biomarker partnerships, contributing to collaborative efforts driving biomedical discovery.
#CFDE #BiomarkerKB #KnowledgeGraph
November 5, 2025 at 6:12 PM
The BiomarkerKB team attended the CFDE 2025 Fall Meeting (Oct 27–28) in Bethesda, MD.
The team joined discussions on shared data infrastructure, interoperability, and biomarker partnerships, contributing to collaborative efforts driving biomedical discovery.
#CFDE #BiomarkerKB #KnowledgeGraph
The team joined discussions on shared data infrastructure, interoperability, and biomarker partnerships, contributing to collaborative efforts driving biomedical discovery.
#CFDE #BiomarkerKB #KnowledgeGraph
Biomarkerkb.org v1.0.4 is live!
New data from Cancer Genome Interpreter & Metabolomics Workbench, added Cell & Protein Ontology links, plus a cookie fix for smoother UX.
Explore the update and other features: biomarkerkb.org
#knowledgegraph #biomarkerKB #bioinformatics
New data from Cancer Genome Interpreter & Metabolomics Workbench, added Cell & Protein Ontology links, plus a cookie fix for smoother UX.
Explore the update and other features: biomarkerkb.org
#knowledgegraph #biomarkerKB #bioinformatics
BiomarkerKB
BiomarkerKB is a Common Fund Data Ecosystem (CFDE) sponsored project to develop a knowledgebase that will organize and integrate biomarker data from different public sources.
Biomarkerkb.org
October 23, 2025 at 2:37 PM
Biomarkerkb.org v1.0.4 is live!
New data from Cancer Genome Interpreter & Metabolomics Workbench, added Cell & Protein Ontology links, plus a cookie fix for smoother UX.
Explore the update and other features: biomarkerkb.org
#knowledgegraph #biomarkerKB #bioinformatics
New data from Cancer Genome Interpreter & Metabolomics Workbench, added Cell & Protein Ontology links, plus a cookie fix for smoother UX.
Explore the update and other features: biomarkerkb.org
#knowledgegraph #biomarkerKB #bioinformatics
BiomarkerKB v1.0.3 is live!
NCBI + ChEBI cross-refs now integrated. Backend upgraded to REST API for improved stability and compatibility.
Explore the update and other features: biomarkerkb.org
#knowledgegraph #biomarkerKB #bioinformatics
NCBI + ChEBI cross-refs now integrated. Backend upgraded to REST API for improved stability and compatibility.
Explore the update and other features: biomarkerkb.org
#knowledgegraph #biomarkerKB #bioinformatics
October 10, 2025 at 3:39 PM
BiomarkerKB v1.0.3 is live!
NCBI + ChEBI cross-refs now integrated. Backend upgraded to REST API for improved stability and compatibility.
Explore the update and other features: biomarkerkb.org
#knowledgegraph #biomarkerKB #bioinformatics
NCBI + ChEBI cross-refs now integrated. Backend upgraded to REST API for improved stability and compatibility.
Explore the update and other features: biomarkerkb.org
#knowledgegraph #biomarkerKB #bioinformatics
Excited to share that BiomarkerKB was featured at the #AWS Open Data Life Sciences Hackathon!
Daniall Masood and Maria Kim helped build a pipeline linking primary datasets to knowledge graphs using Biolink, enabling LLM-powered querying and broader data connectivity.
#biomarkerkb #knowledgegraph
Daniall Masood and Maria Kim helped build a pipeline linking primary datasets to knowledge graphs using Biolink, enabling LLM-powered querying and broader data connectivity.
#biomarkerkb #knowledgegraph
October 8, 2025 at 4:16 PM
Excited to share that BiomarkerKB was featured at the #AWS Open Data Life Sciences Hackathon!
Daniall Masood and Maria Kim helped build a pipeline linking primary datasets to knowledge graphs using Biolink, enabling LLM-powered querying and broader data connectivity.
#biomarkerkb #knowledgegraph
Daniall Masood and Maria Kim helped build a pipeline linking primary datasets to knowledge graphs using Biolink, enabling LLM-powered querying and broader data connectivity.
#biomarkerkb #knowledgegraph
We are now officially on Bluesky! 🎉
Follow BiomarkerKB, a knowledgebase in the NIH CFDE that integrates biomarker data with context to provide a systems-level view of health and disease.
Explore now: biomarkerkb.org
#BiomarkerKB #CFDE #DataIntegration #OmicsData #Biomarkers #Bioinformatics
Follow BiomarkerKB, a knowledgebase in the NIH CFDE that integrates biomarker data with context to provide a systems-level view of health and disease.
Explore now: biomarkerkb.org
#BiomarkerKB #CFDE #DataIntegration #OmicsData #Biomarkers #Bioinformatics
October 3, 2025 at 6:30 PM
We are now officially on Bluesky! 🎉
Follow BiomarkerKB, a knowledgebase in the NIH CFDE that integrates biomarker data with context to provide a systems-level view of health and disease.
Explore now: biomarkerkb.org
#BiomarkerKB #CFDE #DataIntegration #OmicsData #Biomarkers #Bioinformatics
Follow BiomarkerKB, a knowledgebase in the NIH CFDE that integrates biomarker data with context to provide a systems-level view of health and disease.
Explore now: biomarkerkb.org
#BiomarkerKB #CFDE #DataIntegration #OmicsData #Biomarkers #Bioinformatics