Bacterial Genomics
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Unofficial feed from http://Nature.com bacterial genomics subject (https://www.nature.com/subjects/bacterial-genomics). Maintained by @sentausa.bsky.social
Rapid dissemination of Staphylococcus aureus in the neonatal intensive care unit is associated with invasive infection www.nature.com/articles/s41...
Rapid dissemination of Staphylococcus aureus in the neonatal intensive care unit is associated with invasive infection - Nature Communications
In this work, authors use whole genome tracking in a neonatal intensive care unit to reveal a strong link between Staphylococcus aureus colonization and invasive infection, pinpointing critical new ta...
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February 10, 2026 at 6:43 AM
Rapid dissemination of Staphylococcus aureus in the neonatal intensive care unit is associated with invasive infection www.nature.com/articles/s41...
A novel polyhydroxyalkanoate-storing bacterium Thauera carbonocopians sp. nov. isolated from a sequencing batch reactor fed with volatile fatty acids www.nature.com/articles/s41...
A novel polyhydroxyalkanoate-storing bacterium Thauera carbonocopians sp. nov. isolated from a sequencing batch reactor fed with volatile fatty acids - Scientific Reports
Scientific Reports - A novel polyhydroxyalkanoate-storing bacterium Thauera carbonocopians sp. nov. isolated from a sequencing batch reactor fed with volatile fatty acids
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February 2, 2026 at 5:53 PM
A novel polyhydroxyalkanoate-storing bacterium Thauera carbonocopians sp. nov. isolated from a sequencing batch reactor fed with volatile fatty acids www.nature.com/articles/s41...
Genome contamination may lead to an overestimation of horizontal gene transfer inferences www.nature.com/articles/s41...
Genome contamination may lead to an overestimation of horizontal gene transfer inferences - Nature Communications
Nature Communications - Genome contamination may lead to an overestimation of horizontal gene transfer inferences
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February 2, 2026 at 5:52 PM
Genome contamination may lead to an overestimation of horizontal gene transfer inferences www.nature.com/articles/s41...
Aeromonas in South Asia: genomic insights into an environmental pathogen and reservoir of antimicrobial resistance www.nature.com/articles/s41...
Aeromonas in South Asia: genomic insights into an environmental pathogen and reservoir of antimicrobial resistance - Nature Communications
The bacterial genus Aeromonas includes emerging human pathogens, often misidentified as Vibrio cholerae. Here, the authors analyse genomic sequences of over 1,800 Aeromonas isolates, showing that clin...
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January 31, 2026 at 12:07 PM
Aeromonas in South Asia: genomic insights into an environmental pathogen and reservoir of antimicrobial resistance www.nature.com/articles/s41...
A comprehensive catalogue of receptor-binding domains in extracellular contractile injection systems www.nature.com/articles/s41...
A comprehensive catalogue of receptor-binding domains in extracellular contractile injection systems - Nature Communications
Extracellular contractile injection systems (eCISs) are bacteriophage tail-derived toxin delivery complexes that are present in many prokaryotes. Here, the authors present an analysis of eCIS tail fib...
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January 23, 2026 at 9:35 AM
A comprehensive catalogue of receptor-binding domains in extracellular contractile injection systems www.nature.com/articles/s41...
Large-scale testing of antimicrobial lethality at single-cell resolution predicts mycobacterial infection outcomes www.nature.com/articles/s41...
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January 9, 2026 at 1:06 PM
Large-scale testing of antimicrobial lethality at single-cell resolution predicts mycobacterial infection outcomes www.nature.com/articles/s41...
Genomic dissection of the clonal background and global dissemination of hypervirulent Klebsiella pneumoniae CG23-KL57 lineage www.nature.com/articles/s41...
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January 8, 2026 at 8:58 PM
Genomic dissection of the clonal background and global dissemination of hypervirulent Klebsiella pneumoniae CG23-KL57 lineage www.nature.com/articles/s41...
Bacterial chromatin remodeling associated with transcription-induced domains at pathogenicity Islands www.nature.com/articles/s41...
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January 8, 2026 at 8:55 PM
Bacterial chromatin remodeling associated with transcription-induced domains at pathogenicity Islands www.nature.com/articles/s41...
Persistent virulent phages exist across bacterial isolates www.nature.com/articles/s41...
Persistent virulent phages exist across bacterial isolates - Nature Microbiology
The long-term existence of diverse virulent phages within cultures of Escherichia coli and others challenges the virulent–temperate dichotomy and points to non-canonical phage lifestyles.
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December 29, 2025 at 10:26 PM
Persistent virulent phages exist across bacterial isolates www.nature.com/articles/s41...
High frequency body site translocation of nosocomial Pseudomonas aeruginosa www.nature.com/articles/s41...
High frequency body site translocation of nosocomial Pseudomonas aeruginosa - Nature Communications
Here, the authors report within-host diversity and body site translocation dynamics in hospital samples of Pseudomonas aeruginosa and reveal that body site sharing was likely due to within-patient tra...
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November 25, 2025 at 2:05 PM
High frequency body site translocation of nosocomial Pseudomonas aeruginosa www.nature.com/articles/s41...
Introgression impacts the evolution of bacteria, but species borders are rarely fuzzy www.nature.com/articles/s41...
Introgression impacts the evolution of bacteria, but species borders are rarely fuzzy - Nature Communications
It is commonly thought that bacterial species borders tend to be fuzzy, due to frequent exchange of DNA. Here, Diop et al. quantify the patterns of gene flow between core genomes across 50 major bacte...
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November 14, 2025 at 6:01 AM
Introgression impacts the evolution of bacteria, but species borders are rarely fuzzy www.nature.com/articles/s41...
Circulation of Salmonella spp. between humans, animals and the environment in animal-owning households in Malawi www.nature.com/articles/s41...
Circulation of Salmonella spp. between humans, animals and the environment in animal-owning households in Malawi - Nature Communications
In this work, Wilson et al., examined sharing of Salmonella between humans, animals and the environment using household samples from Malawi. They revealed an interconnected web of Salmonella circulati...
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November 12, 2025 at 11:24 AM
Circulation of Salmonella spp. between humans, animals and the environment in animal-owning households in Malawi www.nature.com/articles/s41...
PGAP2: A comprehensive toolkit for prokaryotic pan-genome analysis based on fine-grained feature networks www.nature.com/articles/s41...
PGAP2: A comprehensive toolkit for prokaryotic pan-genome analysis based on fine-grained feature networks - Nature Communications
Prokaryotic pan-genome analysis is crucial for understanding microbial diversity, however current analytical methods often struggle to balance accuracy and computational efficiency. Here the authors p...
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November 10, 2025 at 11:37 PM
PGAP2: A comprehensive toolkit for prokaryotic pan-genome analysis based on fine-grained feature networks www.nature.com/articles/s41...
Complete genome sequencing of 18 urea-utilizing Vibrio strains isolated from coral www.nature.com/articles/s41...
Complete genome sequencing of 18 urea-utilizing Vibrio strains isolated from coral - Scientific Data
Scientific Data - Complete genome sequencing of 18 urea-utilizing Vibrio strains isolated from coral
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October 30, 2025 at 10:09 PM
Complete genome sequencing of 18 urea-utilizing Vibrio strains isolated from coral www.nature.com/articles/s41...
Within-host genetic diversity of pneumococcal serotype 3 during one-year prolonged carriage in a healthy adult www.nature.com/articles/s41...
Within-host genetic diversity of pneumococcal serotype 3 during one-year prolonged carriage in a healthy adult - Nature Communications
In this work, authors tracked a pneumococcal serotype 3 strain persisting for a year in a healthy adult, revealing limited genetic change but stable multidrug resistance and features linked to vaccine escape.
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October 8, 2025 at 6:43 AM
Within-host genetic diversity of pneumococcal serotype 3 during one-year prolonged carriage in a healthy adult www.nature.com/articles/s41...
A genomic view of the bacterial family Endozoicomonadaceae in marine symbioses www.nature.com/articles/s42...
A genomic view of the bacterial family Endozoicomonadaceae in marine symbioses - Communications Biology
This review explores the genomic diversity, ecology, and functional potential of the bacterial family Endozoicomonadaceae in marine symbioses, highlighting their mutualistic to parasitic spectrum and key gaps to be addressed in future research.
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October 3, 2025 at 3:25 PM
A genomic view of the bacterial family Endozoicomonadaceae in marine symbioses www.nature.com/articles/s42...
Elucidating the role of group A Streptococcus genomics and pharyngeal microbiota in acute paediatric pharyngitis www.nature.com/articles/s41...
Elucidating the role of group A Streptococcus genomics and pharyngeal microbiota in acute paediatric pharyngitis - Scientific Reports
Scientific Reports - Elucidating the role of group A Streptococcus genomics and pharyngeal microbiota in acute paediatric pharyngitis
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September 30, 2025 at 12:31 PM
Elucidating the role of group A Streptococcus genomics and pharyngeal microbiota in acute paediatric pharyngitis www.nature.com/articles/s41...
Combined genomic and phenomic analyses reveals multifunctionality of Paenibacillus polymyxa K16 for plant’s nutrition, growth and health www.nature.com/articles/s41...
Combined genomic and phenomic analyses reveals multifunctionality of Paenibacillus polymyxa K16 for plant’s nutrition, growth and health - Scientific Reports
Scientific Reports - Combined genomic and phenomic analyses reveals multifunctionality of Paenibacillus polymyxa K16 for plant’s nutrition, growth and health
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September 30, 2025 at 12:31 PM
Combined genomic and phenomic analyses reveals multifunctionality of Paenibacillus polymyxa K16 for plant’s nutrition, growth and health www.nature.com/articles/s41...
Efficient sequence alignment against millions of prokaryotic genomes with LexicMap www.nature.com/articles/s41...
Efficient sequence alignment against millions of prokaryotic genomes with LexicMap - Nature Biotechnology
LexicMap uses a fixed set of probes to efficiently query gene sequences for fast and low-memory alignment.
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September 11, 2025 at 4:01 AM
Efficient sequence alignment against millions of prokaryotic genomes with LexicMap www.nature.com/articles/s41...
Determination of the prevalence of hypervirulent Klebsiella pneumoniae strains in Northeast Iran, Mashhad www.nature.com/articles/s41...
Determination of the prevalence of hypervirulent Klebsiella pneumoniae strains in Northeast Iran, Mashhad - Scientific Reports
Scientific Reports - Determination of the prevalence of hypervirulent Klebsiella pneumoniae strains in Northeast Iran, Mashhad
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August 27, 2025 at 6:21 PM
Determination of the prevalence of hypervirulent Klebsiella pneumoniae strains in Northeast Iran, Mashhad www.nature.com/articles/s41...
Amycolatopsis cyclosori sp. nov., isolated from the rhizosphere soil of Cyclosorus parasiticus www.nature.com/articles/s41...
Amycolatopsis cyclosori sp. nov., isolated from the rhizosphere soil of Cyclosorus parasiticus - The Journal of Antibiotics
The Journal of Antibiotics - Amycolatopsis cyclosori sp. nov., isolated from the rhizosphere soil of Cyclosorus parasiticus
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August 27, 2025 at 12:05 PM
Amycolatopsis cyclosori sp. nov., isolated from the rhizosphere soil of Cyclosorus parasiticus www.nature.com/articles/s41...
Bringing the uncultivated microbial majority of freshwater ecosystems into culture www.nature.com/articles/s41...
Bringing the uncultivated microbial majority of freshwater ecosystems into culture - Nature Communications
A large fraction of aquatic bacteria remains uncultured. Here, the authors cultivated 627 strains of abundant freshwater bacteria from 14 European lakes, thus generating a collection that includes man...
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August 27, 2025 at 12:03 PM
Bringing the uncultivated microbial majority of freshwater ecosystems into culture www.nature.com/articles/s41...
Ecophysiology and global dispersal of the freshwater SAR11-IIIb genus Fontibacterium www.nature.com/articles/s41...
Ecophysiology and global dispersal of the freshwater SAR11-IIIb genus Fontibacterium - Nature Microbiology
Isolates and metagenome-assembled genomes from a global survey show quasi-endemic and cosmopolitan lineages of SAR11-IIIb, with patterns driven by temperature and latitude.
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August 15, 2025 at 11:13 AM
Ecophysiology and global dispersal of the freshwater SAR11-IIIb genus Fontibacterium www.nature.com/articles/s41...
Ecological connectivity of genomic markers of antimicrobial resistance in Escherichia coli in Hong Kong www.nature.com/articles/s41...
Ecological connectivity of genomic markers of antimicrobial resistance in Escherichia coli in Hong Kong - Nature Communications
E. coli is common in humans, animals and the environment but the extent of circulation between ecological niches is unclear. Here, the authors sample ~1,000 E. coli strains from different urban aquati...
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August 9, 2025 at 8:25 AM
Ecological connectivity of genomic markers of antimicrobial resistance in Escherichia coli in Hong Kong www.nature.com/articles/s41...
Genome-based reclassification of Micromonospora veneta Kaewkla et al. 2022 as a later heterotypic synonym of Micromonospora coerulea Jensen 1932 (Approved lists 1980) www.nature.com/articles/s41...
Genome-based reclassification of Micromonospora veneta Kaewkla et al. 2022 as a later heterotypic synonym of Micromonospora coerulea Jensen 1932 (Approved lists 1980) - Scientific Reports
Scientific Reports - Genome-based reclassification of Micromonospora veneta Kaewkla et al. 2022 as a later heterotypic synonym of Micromonospora coerulea Jensen 1932 (Approved lists 1980)
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July 28, 2025 at 1:48 PM
Genome-based reclassification of Micromonospora veneta Kaewkla et al. 2022 as a later heterotypic synonym of Micromonospora coerulea Jensen 1932 (Approved lists 1980) www.nature.com/articles/s41...