Ashley Shade, Ph.D.
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ashley17061.bsky.social
Ashley Shade, Ph.D.
@ashley17061.bsky.social
Director of Research, CNRS | Microbial Ecologist | incoming EIC for American Society for Microbiology journal #mSystems | ERC #MicroRescue
Reposted by Ashley Shade, Ph.D.
Excited to be back at #mSystems (@asm.org), now as a Senior Editor, working to support our new Editor-in-Chef @ashley17061.bsky.social 🤩

Support society journals! If you have work at the boundary between microbiology & systems biology, send us your manuscript!

journals.asm.org/journal/msys...
mSystems Board of Editors
Members of the mSystems Editorial Board
journals.asm.org
July 2, 2025 at 12:06 AM
Yesterday, I started my term as Editor in Chief of @asm.org journal #mSystems

Looking forward to working with this amazing community to advance publication of our highest quality and most rigorous science!

journals.asm.org/doi/10.1128/...
Humanity’s urgent challenges need solutions from systems microbiology | mSystems
It is with great excitement and sincere dedication that I assume the role of editor in chief of mSystems. Building on the momentum and reputation that mSystems has achieved in its first decade, we wil...
journals.asm.org
July 2, 2025 at 9:36 AM
Check out this new piece about critical precautions and controls needed to conduct microbiome analyses on low biomass samples (like seed endophytes!)

Thanks to
@noahfierer.bsky.social & @greening.bsky.social for leading the charge!

www.nature.com/articles/s41...
Guidelines for preventing and reporting contamination in low-biomass microbiome studies - Nature Microbiology
In this Consensus Statement, the authors outline strategies for processing, analysing and interpreting low-biomass microbiome samples, and provide recommendations to minimize contaminants.
www.nature.com
June 30, 2025 at 5:47 PM
Tomorrow #TeamRhizo and project #MicroRescue are attending the Indo-French workshop on the "Plant microbiome as a driver for the next green agricultural revolution" - so looking forward to meeting new colleagues from India, sharing research, and thinking about harnessing microbes for plant health
May 21, 2025 at 6:59 PM
#TeamRhizo & @erc.europa.eu #ERC project #MicroRescue were in the field collecting soil for our big upcoming host-mediated-microbiome-engineering experiment!

Can't wait to find out which microbes respond to the plant's stress signals!

@ecomicrolyon.bsky.social
@cnrsecologie.bsky.social
May 19, 2025 at 6:44 PM
thanks to @ou.edu Biological Sciences and especially Kara De León for hosting me for a seminar today - It was great to meet with students and share some new #MicroRescue @erc.europa.eu data!
March 28, 2025 at 9:07 PM
The recording of Part 2 of the ASM #mSystems Critical Concepts in Dormancy Webinar is now available

An inspiring panel of researchers share their thoughts about how to measure and discriminate different levels of microbial activity

Enjoy!

www.youtube.com/watch?v=RZub...
Critical Concepts in Dormancy Part II: Discriminating States of Microbial Activity
YouTube video by American Society for Microbiology
www.youtube.com
March 13, 2025 at 3:21 PM
Reposted by Ashley Shade, Ph.D.
Congrats to @sambarnett15.bsky.social on our team's paper accepted at the special issue of Soil Biology & Biochemistry
We use a 7 year spatio-temporal study of heat disturbance in soil to investigate the coupling of viral community dynamics with bacterial.
www.sciencedirect.com/science/arti...
Soil viral community dynamics over seven years of heat disturbance: spatial variation exceeds temporal in annually sampled soils
Viruses are important components of the soil microbiome, influencing microbial population dynamics and the functions of their hosts. However, the rela…
www.sciencedirect.com
February 14, 2025 at 8:18 AM
Join us for the upcoming American Society for Microbiology #mSystems webinar on microbial dormancy and activity!

Free registration here: asm.org/Webinars/mSy...
February 5, 2025 at 11:59 AM
9 minutes ago
Free registration is open for our next Critical Concepts in Dormancy webinar 20 Feb, hosted by American Society for Microbiology journal mSystems!
asm.org/Webinars/mSy...

Discuss how to evaluate microbial activity, including in challenging environments!

A stellar speaker line up 🤩
mSystems Thinking Series
mSystems, an open-access ASM journal publishing diverse systems microbiology research, hosts a webinar series that features editors discussing a variety of topics in an interactive forum.
asm.org
January 9, 2025 at 9:40 AM
Check out this article about defining microbial activity and dormancy, and why it's important for thinking about climate change

There will be an in-depth symposium moderated by me at the ASM #Microbe2025 in LA! and, good news you can still submit your abstract!

asm.org/Articles/202...
Why Dormant Microbes Matter in a Changing Climate | ASM.org
Most microbes on Earth are dormant, yet they play key roles in the evolution and function of microbial populations. How can we harness microbial dormancy to promote human and environmental health?
asm.org
December 17, 2024 at 3:21 PM
Congrats to my EcoMicroLyon colleagues on their new publication about pollution gradients, microbial communities, and mosquito larvae! Nice assessment of host-environment-microbiome systems in urban environments
academic.oup.com/femsec/artic...
Pollution gradients shape microbial communities associated with Ae. albopictus larval habitats in urban community gardens
Microbial composition of larval habitats covaried differentially along the pollution gradients according to the presence/absence of larvae. Noncolonized wa
academic.oup.com
December 6, 2024 at 9:42 AM
Look at the new cover of mSystems! Beautiful seeds and their microbiomes

In this study we found stable transmission of particular bacterial taxa across plant generations via the seed, despite parent plant exposure to stress

@microbialmarie.bsky.social

journals.asm.org/toc/msystems...
mSystems Table of Contents Volume 9, Issue 11
mSystems: Table of Contents Volume 9, Issue 11
journals.asm.org
December 4, 2024 at 6:26 AM
Submit your abstract for the American Society for Microbiology
#Microbe2025 annual meeting in Los Angeles!

I'm organizing a symposium on Microbial Dormancy! Hope to receive your abstract and discuss with you there.

Early abstracts close Dec 3, don't delay!
abstractsonline.com/pp8/#!/20974...
Program Planner
abstractsonline.com
November 26, 2024 at 6:39 AM
Did you catch our Thinking Series Webinar on Microbial Dormancy? If not, no fret: it's available on youtube!
www.youtube.com/watch?v=Ytz1...
Critical Concepts in Dormancy Part I: Dormancy in Human Health and the Environment
YouTube video by American Society for Microbiology
www.youtube.com
November 22, 2024 at 1:54 PM
I am proud to have represented our research #MicroRescue and THE MICROBES at the recent colloquium by the Fondation Pierre Verots

My talk (in English!) is an accessible overview as to why microbes are important for climate change
November 21, 2024 at 11:10 AM