andreas e lundberg
@andemening.bsky.social
🇸🇪 bioinformatics, quantitative genetics, Polaroids & 4x5 ….
UU | SLU
UU | SLU
Reposted by andreas e lundberg
In this blog post, we show how chromatin accessibility can be profiled with minimal processing using nanopore sequencing – preserving native structure and capturing rich signal.
Read it here: epi2me.nanoporetech.com/chromatin-ac...
Read it here: epi2me.nanoporetech.com/chromatin-ac...
Chromatin accessibility data and tool release
Functional epigenomics uses high-throughput sequencing data to study how epigenetic modifications…
epi2me.nanoporetech.com
June 16, 2025 at 12:21 PM
In this blog post, we show how chromatin accessibility can be profiled with minimal processing using nanopore sequencing – preserving native structure and capturing rich signal.
Read it here: epi2me.nanoporetech.com/chromatin-ac...
Read it here: epi2me.nanoporetech.com/chromatin-ac...
Reposted by andreas e lundberg
📑 Researchers are moving away from a single point of reference to compare multiple genomes against each other, providing a much greater picture of genetic diversity.
🔗 buff.ly/4Kwgz6N
#pangenome #genomics 🖥️ 🧬
🔗 buff.ly/4Kwgz6N
#pangenome #genomics 🖥️ 🧬
What’s the power of a pangenome?
Here at the Earlham Institute a lot of people are very excited about pangenomes. But what are they? And how will they change genetics?
www.earlham.ac.uk
June 17, 2025 at 2:11 PM
📑 Researchers are moving away from a single point of reference to compare multiple genomes against each other, providing a much greater picture of genetic diversity.
🔗 buff.ly/4Kwgz6N
#pangenome #genomics 🖥️ 🧬
🔗 buff.ly/4Kwgz6N
#pangenome #genomics 🖥️ 🧬
Reposted by andreas e lundberg
Pangenome-aware DeepVariant https://www.biorxiv.org/content/10.1101/2025.06.05.657102v1
June 6, 2025 at 10:48 PM
Pangenome-aware DeepVariant https://www.biorxiv.org/content/10.1101/2025.06.05.657102v1
Reposted by andreas e lundberg
SVbyEye: A visual tool to characterize structural variation among whole-genome assemblies academic.oup.com/bioinformati... 🧬🖥️🧪 github.com/daewoooo/SVb...
June 9, 2025 at 3:30 PM
SVbyEye: A visual tool to characterize structural variation among whole-genome assemblies academic.oup.com/bioinformati... 🧬🖥️🧪 github.com/daewoooo/SVb...
Reposted by andreas e lundberg
Roche has given more details of their SBX NGS technology: it'll be called Axelios, and we know it's aimed at competing against Illumina SBS technology, the technology the San Diego company acquired from Cambridge UK Solexa.
I'll give you a second to catch up with it... Axelios vs Solexa....
I'll give you a second to catch up with it... Axelios vs Solexa....
June 1, 2025 at 1:43 PM
Roche has given more details of their SBX NGS technology: it'll be called Axelios, and we know it's aimed at competing against Illumina SBS technology, the technology the San Diego company acquired from Cambridge UK Solexa.
I'll give you a second to catch up with it... Axelios vs Solexa....
I'll give you a second to catch up with it... Axelios vs Solexa....
Reposted by andreas e lundberg
I took biochem in 2001, and for nearly 20 years read amino acid sequences daily… and I never knew Dayhoff named them or even the logic behind things like Q until last Friday (h/t Mike Janech). Also, this is another big Dayhoff moment for me. She was incredible!
#proteomics #bioinformatics
#proteomics #bioinformatics
Dr. Margaret Oakley Dayhoff
biology.arizona.edu
November 24, 2024 at 12:39 PM
I took biochem in 2001, and for nearly 20 years read amino acid sequences daily… and I never knew Dayhoff named them or even the logic behind things like Q until last Friday (h/t Mike Janech). Also, this is another big Dayhoff moment for me. She was incredible!
#proteomics #bioinformatics
#proteomics #bioinformatics
Musse is not my cat
Hope the neighbors don’t see this post .. extremely unlikely.. cause he likes it better here
Hope the neighbors don’t see this post .. extremely unlikely.. cause he likes it better here
November 23, 2024 at 1:47 AM
Musse is not my cat
Hope the neighbors don’t see this post .. extremely unlikely.. cause he likes it better here
Hope the neighbors don’t see this post .. extremely unlikely.. cause he likes it better here
Last time I did genetics … GATK was new and the best thing ever. I don’t feel that’s the case anymore, especially with non-model organisms. It’s lacking in parallelism, and I don’t have gold standard sets. So, the new rage is #DeepVariant … but my new favorite is bwa-meme, and containers
November 23, 2024 at 1:24 AM
Last time I did genetics … GATK was new and the best thing ever. I don’t feel that’s the case anymore, especially with non-model organisms. It’s lacking in parallelism, and I don’t have gold standard sets. So, the new rage is #DeepVariant … but my new favorite is bwa-meme, and containers
I take my desires for reality because I believe in the reality of my desires
November 23, 2024 at 1:17 AM
I take my desires for reality because I believe in the reality of my desires
