#PangenomeGraphs
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jsantoyo.bsky.social
Beyond reference bias: Making pangenomes accessible with PangyPlot. #GenomeBrowser #PangenomeGraphs #GeneAnnotations #Visualization #Genomics #Bioinformatics @biorxivpreprint.bsky.social
www.biorxiv.org/content/10.1...
November 8, 2025 at 5:31 PM
jsantoyo.bsky.social
Rapid, accurate long- and short-read mapping to large pangenome graphs with vg Giraffe. #Pangenome #ReadMapping #PangenomeGraphs @biorxivpreprint.bsky.social
www.biorxiv.org/content/10.1...
October 2, 2025 at 9:58 PM
jsantoyo.bsky.social
PG-SCUnK: measuring pangenome graph representativeness using single-copy and universal K-mers.#PangenomeGraphs #Kmers #Genomics #Bioinformatics @biorxiv-bioinfo.bsky.social 🧬 🖥️
www.biorxiv.org/content/10.1...
September 8, 2025 at 2:31 PM
jsantoyo.bsky.social
A survey of sequence-to-graph mapping algorithms in the pangenome era. #Pangenomes #SequenceToGraph #PangenomeGraphs #GenomeBiology
genomebiology.biomedcentral.com/articles/10....
A survey of sequence-to-graph mapping algorithms in the pangenome era - Genome Biology
A pangenome can reveal the genetic diversity across different individuals simultaneously. It offers a more comprehensive reference for genome analysis compared to a single linear genome that may…
genomebiology.biomedcentral.com
June 3, 2025 at 9:15 AM
jsantoyo.bsky.social
Pairwise graph edit distance characterizes the impact of the construction method on pangenome graphs. #PangenomeGraphs #Bioinformatics 💻 🧬
academic.oup.com/bioinformati...
academic.oup.com
May 30, 2025 at 6:13 PM
ergabiodiv.bsky.social
Missed the #ERGAPlenary on Monday? No worries! You can watch Giulio Formenti's talk on our channel:
▶️ youtu.be/XbDA1ACkIrU?...
📄 www.nature.com/articles/s41...

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#pangenomes #pangenomegraphs #biodiversity #genomics
Pangenome graphs and their applications in biodiversity genomics - January 2025
YouTube video by ERGA - European Reference Genome Atlas
youtu.be
February 20, 2025 at 9:28 AM
biorxiv-bioinfo.bsky.social
Assessing genome conservation on pangenomegraphs with PanSel https://www.biorxiv.org/content/10.1101/2024.04.26.591236v1
Assessing genome conservation on pangenomegraphs with PanSel https://www.biorxiv.org/content/10.1101/2024.04.26.591236v1
Motivation: With more and more telomere-to-telomere genomes assembled, pangenomes make it possible t
www.biorxiv.org
April 29, 2024 at 12:46 AM
biorxivpreprint.bsky.social
Assessing genome conservation on pangenomegraphs with PanSel https://www.biorxiv.org/content/10.1101/2024.04.26.591236v1
Assessing genome conservation on pangenomegraphs with PanSel https://www.biorxiv.org/content/10.1101/2024.04.26.591236v1
Motivation: With more and more telomere-to-telomere genomes assembled, pangenomes make it possible t
www.biorxiv.org
April 29, 2024 at 12:46 AM