#‬BioimageAnalysis
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mycroscopy.bsky.social
Opening of the networking dinner by traditional sake opening ceremony
#GloBIAS2025 #BioimageAnalysis @kbias.bsky.social @globias.bsky.social
Four men opening sake barrel in a ceremonial way
October 30, 2025 at 2:49 AM
gerbi-gmb.de
🔬 Join us in Leipzig!

The #YMIA panel discussion "The Power of Sharing: Open Data in Bio-image Analysis" is happening in person at UFZ Leipzig on Friday!

Organized by the Young Microscopists & Image Analysts (YMIA) Team, part of the GerBI community.

#BioImageAnalysis #Microscopy #OpenData
October 22, 2025 at 7:27 AM
damiandn.bsky.social
As part of our monthly meeting, we do a run-down of all* the new #bioimageanalysis tools that have been published in the last couple of weeks on BioRxiv**, so I thought I'd start sharing here as well.

*I will miss some, apologies if I miss your paper
October 17, 2025 at 7:17 AM
bethcimini.bsky.social
Big news! Our week-long #bioimageanalysis bootcamp is BACK! Learn how to think about bioimage analysis like the pros do, learn what corrections you should (and shouldn't!) apply to your images, learn open source tools, and more. Apply NOW at broad.io/BAB3 for our January 2026 course!
A flyer for the Bioimage Analysis Beginnings Bootcamp - blue and white with a picture of cells on the top. It says "Learn core bioimage analysis skills using open-source tools for light microscopy. Open to participants at all skill levels." It also says it will be held a the Broad Institute, 415 Main Street, Cambridge MA USA, on Monday to Friday January 12th-16, 2026, from 9-5pm. Registration is $750 academic, $1250 industry, and applications are open at broad.io/BAB3
October 14, 2025 at 9:31 PM
jytinevez.bsky.social
Hi all. This is the recording of the online seminar I gave following the kind invitation of #GLOBIAS.

I share what we have learned delivering #BioimageAnalysis services in the IAH core facility of the @institutpasteur.bsky.social

research.pasteur.fr/en/team/imag...
⬇️
October 13, 2025 at 8:10 AM
bethcimini.bsky.social
#bioimageanalysis wouldn't be the same without all the great RSEs who make our tools and keep them working! Great paper on this from a couple of years ago linked below - if there's a tool that makes your life easier, think about taking a few minutes today to thank the person or people who make it!
October 9, 2025 at 3:47 PM
iarganda.bsky.social
After an intense week of learning, coding and playing with advanced methods on #BioimageAnalysis, a well deserved BBQ 🔥 to recover our strength 💪 for tomorrow, the last day of the course 😢

Enjoy!
September 18, 2025 at 6:23 PM
haesleinhuepf.bsky.social
I gave two seminars at @embl.org Heidelberg these days: One about using LLMs via #biabob for #BioImageAnalysis and one about how LLMs impact BioImage #DataScience
Thanks EMBL for having me!
Materials #openaccess 🧑‍🏫🖥️🔓
zenodo.org/records/1705...
zenodo.org/records/1710...
scads.github.io/llm-bia-2025
September 16, 2025 at 7:02 PM
iarganda.bsky.social
And, after lunch 🥪, we keep going with the super interesting "Lecture 1: Women in science" by @perrinegil.bsky.social 💪💜, learning about her personal path in #BioimageAnalysis and how to promote gender equality in the field 🙆‍♀️📊🖥️🔬
Full class of students attending the Women in Science talk by Perrine Paul-Gilloteaux.
September 15, 2025 at 1:15 PM
biapyx.bsky.social
This is a new step for accessible, FAIR bioimage AI 🚀

Try the tool 👉 imaging.usegalaxy.eu?tool_id=tool...

Contribute your models 🧑‍🔬 And join the community making bioimage analysis open & reproducible!

#BiaPy #GalaxyProject #BioImageAnalysis #Bioimaging
Galaxy
Galaxy is a community-driven web-based analysis platform for life science research.
imaging.usegalaxy.eu
October 20, 2025 at 2:11 PM
kbias.bsky.social
Ch06 SurfCut macro deconstruction (for plant epidermis 3D analysis)
Ch07 A Matlab pipeline for spatiotemporal quantification of monolayer cell migration
#BioImageAnalysis #NEUBAIS
January 28, 2025 at 7:15 PM
pm-lab.bsky.social
Phindr3D doesn’t require segmentation of cells to learn #3D features from the microscopy image data set. #MachineLearning #BioImageAnalysis
November 22, 2024 at 7:50 PM
biovoxxel.de
I got inspired by @guijacquemet.bsky.social's idea of making regular posts on #bioimageanalysis tools and tips under #BIATooloftheday. Will try to complement his suggestions with as little overlap as possible under #BIAToolTip with a focus on #Fiji and #ImageJ and friends.
In the hope it helps
November 16, 2024 at 2:33 PM
globias.bsky.social
The new Global Bioimage Analysts' Society (GloBIAS) initiative announces the first in-person workshop to be held in Gothenburg, Sweden, 4-8 November 2024.

More info on our new website: globias.org

@globias.bsky.social #NEUBIAS #bioimageanalysis
January 16, 2024 at 11:46 PM
iarganda.bsky.social
If we measure the size of the "box" in the middle of the image, we have the field of view of the CNN and thus the padding-affected area.

You can find some code to do this in a notebook we prepared for #BioImageAnalysis book chapter:

colab.research.google.com/github/NEUBI...

I hope it helps! 🤗
Google Colab
colab.research.google.com
November 20, 2024 at 8:39 AM
svi.nl
Before vs After: Can you spot the difference in colocalization? Join our free webinar July 10th svi.nl/webinarinvitation on colocalization. Can't wait? doi.org/10.1093/mict...

#Microscopy #ImageRestoration #BioImageAnalysis #QuantitativeImaging #superresolution #AccurateColocalizationAnalysis
July 3, 2025 at 6:44 AM
jo-soltwedel.bsky.social
#bioimage 🔬 data #visualization and #exploration in @napari.org with the napari-clusters-plotter (0.10.0) becoming yet a bit more versatile: Select objects & put them into new layers for processing, introspection or whatever. Works for all layers, of course! #bioimageanalysis
@mazoc.bsky.social
Copying selected elements of a layer in napari into a new layer
July 16, 2025 at 2:09 PM
mycroscopy.bsky.social
@globias.bsky.social now has a YouTube channel! 😍 and I'm in it 😁🤩
I'm so excited to share one of the videos with the idea behind GloBIAS: www.youtube.com/watch?v=LPJE... #GloBIAS #bioimageAnalysis
GloBIAS: Global BioImage Analysts' society - the idea
YouTube video by GloBIAS
www.youtube.com
February 11, 2025 at 9:04 AM
academiceurope.bsky.social
Job - Alert 🧬

🎓 MASTERS INTERN (M/F/D): MACHINE LEARNING AND BIOIMAGE ANALYSIS

Deadline: 2025-03-31
Location: Germany, Dortmund, Nordrhein Westfalen

www.academiceurope.com/job/?id=7080

#hiring #MastersInternship #BioimageAnalysis #computerscience #statistics #BiomedicalSciences #Mathematics
Academic Europe - Masters Intern (m/f/d): Machine learning and bioimage analysis
www.academiceurope.com
March 5, 2025 at 7:36 AM
bethcimini.bsky.social
BIG NEWS - for the first time ever, we're running a Bioimage Analysis Beginnings Bootcamp. Learn #bioimageanalysis from awesome folks, and gain familiarity with some new tools as well as how to pick the right tool in the first place. Aug 4th-8th - apply here (soon!) forms.gle/d2fCXsrWHVP8...
Ad for the Bioimage Analysis Beginnings Bootcamp at the Broad Institute. Where & When Broad Institute, 415 Main Street, Cambridge MA (in-person only) Monday–Friday, August 4–8, 20259:00 AM – 5:00 PM About the Bootcamp Learn core bioimage analysis skills using open-source tools for light microscopy in this hands-on, in-person course. The Bootcamp covers annotation, segmentation, and deep learning fundamentals. Fee: $600 (Academic/Non-Profit) | $1000 (Industry/For-Profit) For more information email ImagingAdmin@broadinstitute.org
May 1, 2025 at 9:22 PM
dgaboriau.bsky.social
Top position in Paris with Jean-Yves @jytinevez.bsky.social

#bioimageanalysis 🔬
October 7, 2025 at 2:29 PM
iarganda.bsky.social
✨ Fantastic opportunity for people looking for image facility jobs! What better than working with the awesome @jytinevez.bsky.social in Paris? 🤩

#bioimaging #bioimageanalysis #facilityjob

👇
October 8, 2025 at 8:01 AM
paveltomancak.bsky.social
Calling the #bioimageanalysis community! Remember the #GatherIsland used during the online #I2K? Remember #Hebedas?

#Woodstockbio2025 will be like this, in real life on a #YMCA #campsite in #Czech woods.

Bioimage Geeks of the World - Unite and Register!

woodstock.img.cas.cz/registration/
March 7, 2025 at 3:54 PM
ai4life.bsky.social
At the @training.ebi.embl.org course on Microscopy Data Analysis: Machine Learning & @bioimagearchive.bsky.social, Dominik Kutra from @ilastik-team.bsky.social introduced ilastik and how it supports image analysis. Now, it's time for a hands-on session! 🚀 #BioImageAnalysis #MachineLearning
April 2, 2025 at 8:51 AM
ayakimovich.bsky.social
It never ceases to amaze me how much information we can get just by looking at the gradients in #BioImageAnalysis #AI #GenAI Kudos Ivo F. Sbalzarini and the group! 🧪 @mosaicgroup.bsky.social @hzdr.bsky.social @mpi-cbg.de @casusscience.bsky.social onlinelibrary.wiley.com/doi/10.1002/...
Regularized Gradient Statistics Improve Generative Deep Learning Models of Super Resolution Microscopy
A generative AI model for super-resolution microscopy images is presented. Super-resolution microscopy provides high spatial detail at the expense of lower time resolution. Using it for live samples ...
onlinelibrary.wiley.com
June 6, 2025 at 4:45 PM