Sushmita Roy
@sroyyors.bsky.social
Regulatory genomics, machine learning, networks, systems biology, evolution
Thank you Feyza for the collaboration!
November 26, 2025 at 6:02 PM
Thank you Feyza for the collaboration!
Reposted by Sushmita Roy
Collaborative work shared with: #JasonErnst @juliazeitlinger.bsky.social @shaunmahony.bsky.social @amathelier.bsky.social @sroyyors.bsky.social @ferhatay.bsky.social and #SaurabhSinha
May 13, 2025 at 4:59 PM
Collaborative work shared with: #JasonErnst @juliazeitlinger.bsky.social @shaunmahony.bsky.social @amathelier.bsky.social @sroyyors.bsky.social @ferhatay.bsky.social and #SaurabhSinha
Reposted by Sushmita Roy
Authors include: @juliazeitlinger.bsky.social, @sroyyors.bsky.social, @ferhatay.bsky.social, @amathelier.bsky.social, @alemedinarivera.bsky.social, @shaunmahony.bsky.social
May 14, 2025 at 10:02 AM
I had a great time visiting and learning about the cutting edge basic and translational research going on at the Fred! Thank you for inviting me Manu Setty!
May 8, 2025 at 6:39 PM
I had a great time visiting and learning about the cutting edge basic and translational research going on at the Fred! Thank you for inviting me Manu Setty!
its based on this report www.gao.gov/products/gao... that was linked off the nih directors announcement. But just stopping to fund grants with a foreign component without a policy in place seems to fly in the face of efficiency and mindful use of federal resources.
Grants Management: Recent Guidance Could Enhance Subaward Oversight
Some federal grant recipients pass some of their award funding to subrecipients. However, there have been issues with the completeness and accuracy of...
www.gao.gov
May 4, 2025 at 3:10 AM
its based on this report www.gao.gov/products/gao... that was linked off the nih directors announcement. But just stopping to fund grants with a foreign component without a policy in place seems to fly in the face of efficiency and mindful use of federal resources.
haha.. no :-)😀 (thankfully)
May 3, 2025 at 10:14 PM
haha.. no :-)😀 (thankfully)
very nice.. NMF++ based methods shine for their elegance and interpretability.. was curious about its comparison to MEFISTO www.nature.com/articles/s41...
Nonnegative spatial factorization applied to spatial genomics - Nature Methods
This paper presents nonnegative spatial factorization, a general framework for spatially aware and interpretable dimension reduction for high-dimensional spatial data, and its application to spatial t...
www.nature.com
April 30, 2025 at 5:02 AM
very nice.. NMF++ based methods shine for their elegance and interpretability.. was curious about its comparison to MEFISTO www.nature.com/articles/s41...
Its behind a paywall, but our biorxiv version is updated .. www.biorxiv.org/content/10.1...
Examining dynamics of three-dimensional genome organization with multi-task matrix factorization
Three-dimensional (3D) genome organization, which determines how the DNA is packaged inside the nucleus, has emerged as a key component of the gene regulation machinery. High-throughput chromosome con...
www.biorxiv.org
April 29, 2025 at 12:13 AM
Its behind a paywall, but our biorxiv version is updated .. www.biorxiv.org/content/10.1...
I am a little late introducing myself.. I am at the University of Wisconsin-Madison. We are interested in #ML methods to understand gene regulation & regulatory networks from bulk and single cell omic data.
April 27, 2025 at 2:52 AM
I am a little late introducing myself.. I am at the University of Wisconsin-Madison. We are interested in #ML methods to understand gene regulation & regulatory networks from bulk and single cell omic data.