Sebastian Ayala Ruano
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sayalaruano.bsky.social
Sebastian Ayala Ruano
@sayalaruano.bsky.social
28 followers 87 following 8 posts
Bioinformatician & data scientist at DTU Biosustain. #MachineLearning, #NetSci, and #OpenScience enthusiast. 🇪🇨➡️🇩🇰
sayalaruano.github.io
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sayalaruano.bsky.social
Excited to present VueGen - github.com/Multiomics-A..., a tool to automate the creation of scientific reports, at @bosc.bsky.social ISMB/ECCB in Liverpool!

🗣️ Flash Talk: Mon July 21, 15:25, Room 03A
📌 Poster: Mon July 21, 10-11:20, A-128

Feel free to reach out with any questions!
#bioinfo #dataviz
Poster of the VueGen project in the Bioinformatics Open Source Conference (BOSC) 2025 (as part of ISMB/ECCB 2025) on July 21, 2025 Presentation of the VueGen project in the Bioinformatics Open Source Conference (BOSC) 2025 (as part of ISMB/ECCB 2025) on July 21, 2025
July 21, 2025 at 7:35 AM
sayalaruano.bsky.social
[4/5] To showcase VueGen’s functionality, we present two case studies. The first is a basic example with a predefined directory, while the second is an end-to-end example that creates the folder and components using data from the Earth Microbiome Project - earthmicrobiome.org.
Case study: VueGen application to the Earth Microbiome Project (EMP). A) EMP logo and example plots from the original study, illustrating global microbial diversity. B) Workflow to reproduce EMP visualizations and create reports with VueGen. A Jupyter notebook and Nextflow script were used to generate plots, dataframes, descriptions, and other content. These outputs were organized into a folder and processed with VueGen to create reports, demonstrating its application in a research project.
March 7, 2025 at 10:28 AM
sayalaruano.bsky.social
📢Excited to share the @biorxiv-bioinfo.bsky.social preprint of Vuegen, a tool that automates the generation of scientific reports.

🔗http://tinyurl.com/2p9urafw

We developed this software at the MoNA group -https://tinyurl.com/4ccus8fv, @DTUBiosustain

#dataviz #bioinformatics #nextflow #streamlit🧵
Graphical overview of VueGen’s workflow and components. The diagram illustrates VueGen’s pipeline and report structure, starting from either a directory or a YAML configuration file. If a directory is provided, the software generates a configuration file with the report structure. Reports consist of hierarchical sections and subsections, each containing various components such as plots, dataframes, Markdown, HTML, and data retrieved via API calls. Depending on the file format and report type, components can be static or interactive. Reports can be exported in various formats, including documents (PDF, HTML, DOCX, ODT), presentations (PPTX, Reveal.js), Jupyter notebooks, and Streamlit web applications.
March 7, 2025 at 10:25 AM