Reindert Nijland
@reindertn.bsky.social
Associate professor Molecular Marine Ecology at Wageningen University. I sequence anything, anywhere, to understand changing marine ecosystems. Main focus on the North Sea.
Reposted by Reindert Nijland
Reindert Nijland at #EEA2025
Offshore wind farms have a variety of ecosystem impacts. More hard habitat= more invertebrates at the base of the food chain.
Seafloor cables transport electricity to shore- this can affect electrosensitive sharks and rays. 🧪🦑🌎🦈🐠
Offshore wind farms have a variety of ecosystem impacts. More hard habitat= more invertebrates at the base of the food chain.
Seafloor cables transport electricity to shore- this can affect electrosensitive sharks and rays. 🧪🦑🌎🦈🐠
Elasmobranchs in offshore wind farms
The development of offshore wind farms (OWFs) in coastal seas presents both risks and opportunities for threatened elasmobranch populations, but their…
www.sciencedirect.com
October 30, 2025 at 9:02 AM
Reindert Nijland at #EEA2025
Offshore wind farms have a variety of ecosystem impacts. More hard habitat= more invertebrates at the base of the food chain.
Seafloor cables transport electricity to shore- this can affect electrosensitive sharks and rays. 🧪🦑🌎🦈🐠
Offshore wind farms have a variety of ecosystem impacts. More hard habitat= more invertebrates at the base of the food chain.
Seafloor cables transport electricity to shore- this can affect electrosensitive sharks and rays. 🧪🦑🌎🦈🐠
Reposted by Reindert Nijland
Dorado is 1.0! 🎉
LC25 release adds v5.2 DNA/RNA models with a new suite of mod models that are higher accuracy, lower FP rates, and significantly faster.
- Introducing dorado variant 👀
- HAC error rate is down over 25%.
- New 2’Ome mod models
- Hopper & Blackwell SUP speed ups
#Nanoporeconf
LC25 release adds v5.2 DNA/RNA models with a new suite of mod models that are higher accuracy, lower FP rates, and significantly faster.
- Introducing dorado variant 👀
- HAC error rate is down over 25%.
- New 2’Ome mod models
- Hopper & Blackwell SUP speed ups
#Nanoporeconf
May 21, 2025 at 5:14 PM
Dorado is 1.0! 🎉
LC25 release adds v5.2 DNA/RNA models with a new suite of mod models that are higher accuracy, lower FP rates, and significantly faster.
- Introducing dorado variant 👀
- HAC error rate is down over 25%.
- New 2’Ome mod models
- Hopper & Blackwell SUP speed ups
#Nanoporeconf
LC25 release adds v5.2 DNA/RNA models with a new suite of mod models that are higher accuracy, lower FP rates, and significantly faster.
- Introducing dorado variant 👀
- HAC error rate is down over 25%.
- New 2’Ome mod models
- Hopper & Blackwell SUP speed ups
#Nanoporeconf
Reposted by Reindert Nijland
Now clear how much extra information from @nanoporetech.com data - especially full transcripts #nanoporeconf
May 21, 2025 at 6:08 PM
Now clear how much extra information from @nanoporetech.com data - especially full transcripts #nanoporeconf
Reposted by Reindert Nijland
At London Calling, Rosemary Sinclair Dokos and Lakmal Jayasinghe shared how we’re doubling down on what matters: delivering a future-ready platform with proven performance across DNA, RNA, and now proteins. Click here to discover what’s new – and why it matters: nanoporetech.com/news/london-...
May 21, 2025 at 8:36 PM
At London Calling, Rosemary Sinclair Dokos and Lakmal Jayasinghe shared how we’re doubling down on what matters: delivering a future-ready platform with proven performance across DNA, RNA, and now proteins. Click here to discover what’s new – and why it matters: nanoporetech.com/news/london-...
Reposted by Reindert Nijland
Our previously published paper was picked up in local Dutch news as well as here, very exciting to see the media take notice of this work 🦈
@reindertn.bsky.social @w-u-r.bsky.social
#eDNA #Sharks #Rays #OWFs
oceanographicmagazine.com/news/are-off....
@reindertn.bsky.social @w-u-r.bsky.social
#eDNA #Sharks #Rays #OWFs
oceanographicmagazine.com/news/are-off....
Are offshore wind farms the next safe spaces for sharks and rays? - Oceanographic
New eDNA evidence has confirmed the presence of active shark and rays around Dutch offshore wind farms, posing an exciting new question.
oceanographicmagazine.com
May 15, 2025 at 11:38 AM
Our previously published paper was picked up in local Dutch news as well as here, very exciting to see the media take notice of this work 🦈
@reindertn.bsky.social @w-u-r.bsky.social
#eDNA #Sharks #Rays #OWFs
oceanographicmagazine.com/news/are-off....
@reindertn.bsky.social @w-u-r.bsky.social
#eDNA #Sharks #Rays #OWFs
oceanographicmagazine.com/news/are-off....
Two papers I contributed to, published online on the same day! Both on large charismatic fish from the North Sea: Sharks and Sturgeons! 🦈🦈
Sharks and rays: www.sciencedirect.com/science/arti...
Sturgeons: link.springer.com/article/10.1...
Sharks and rays: www.sciencedirect.com/science/arti...
Sturgeons: link.springer.com/article/10.1...
April 10, 2025 at 7:07 PM
Two papers I contributed to, published online on the same day! Both on large charismatic fish from the North Sea: Sharks and Sturgeons! 🦈🦈
Sharks and rays: www.sciencedirect.com/science/arti...
Sturgeons: link.springer.com/article/10.1...
Sharks and rays: www.sciencedirect.com/science/arti...
Sturgeons: link.springer.com/article/10.1...
Just out: Our paper on the historical occurrence of sea sturgeons (Acipenser sturio and A. oxyrinchus) in European waters, and consequences for reintroduction!
link.springer.com/article/10.1...
link.springer.com/article/10.1...
Towards an optimised strategy for reintroducing sea sturgeons (Acipenser sturio and A. oxyrinchus) to Europe - Biodiversity and Conservation
The aim of this paper is to identify an optimised strategy for the reintroduction of two anadromous sturgeon species to Europe: the critically endangered European sturgeon (Acipenser sturio) and the v...
link.springer.com
April 10, 2025 at 6:52 PM
Just out: Our paper on the historical occurrence of sea sturgeons (Acipenser sturio and A. oxyrinchus) in European waters, and consequences for reintroduction!
link.springer.com/article/10.1...
link.springer.com/article/10.1...
Reposted by Reindert Nijland
📣Excited to share that our new #paper is out! Using #eDNA #metabarcoding to detect #elasmobranchs in #OWFs in the North Sea🦈🦈
www.sciencedirect.com/science/arti...
@reindertn.bsky.social
@nanoporetech.com
www.sciencedirect.com/science/arti...
@reindertn.bsky.social
@nanoporetech.com
April 10, 2025 at 5:23 AM
📣Excited to share that our new #paper is out! Using #eDNA #metabarcoding to detect #elasmobranchs in #OWFs in the North Sea🦈🦈
www.sciencedirect.com/science/arti...
@reindertn.bsky.social
@nanoporetech.com
www.sciencedirect.com/science/arti...
@reindertn.bsky.social
@nanoporetech.com
Reposted by Reindert Nijland
Great windfarm - elasmobrach #eDNA research by Auriel Summer-Hempel @reindertn.bsky.social @aquaecomics.mastodon.social.ap.brid.gy
March 20, 2025 at 5:55 PM
Great windfarm - elasmobrach #eDNA research by Auriel Summer-Hempel @reindertn.bsky.social @aquaecomics.mastodon.social.ap.brid.gy
Super happy our paper on #eDNA #metabarcoding of North Sea fish using @nanoporetech.com sequencing is finally published in Molecular Ecology Resources: onlinelibrary.wiley.com/doi/10.1111/...
The Long and the Short of It: Nanopore‐Based eDNA Metabarcoding of Marine Vertebrates Works; Sensitivity and Species‐Level Assignment Depend on Amplicon Lengths
To monitor the effect of nature restoration projects in North Sea ecosystems, accurate and intensive biodiversity assessments are vital. DNA-based techniques and especially environmental (e)DNA metab....
onlinelibrary.wiley.com
February 11, 2025 at 9:36 AM
Super happy our paper on #eDNA #metabarcoding of North Sea fish using @nanoporetech.com sequencing is finally published in Molecular Ecology Resources: onlinelibrary.wiley.com/doi/10.1111/...
Reposted by Reindert Nijland
Fancy some light Christmas reading? I’m happy to share our new preprint, covering the impact and cutting edge improvements to PrimalScheme!
Preprint: www.biorxiv.org/content/10.1...
Preprint: www.biorxiv.org/content/10.1...
PrimalScheme: open-source community resources for low-cost viral genome sequencing
Viral genome sequencing using the ARTIC protocol has been a vital tool for understanding the spread of epidemics including Ebola, Zika, COVID-19 and Mpox and has seen widespread adoption due to its lo...
www.biorxiv.org
December 23, 2024 at 10:37 AM
Fancy some light Christmas reading? I’m happy to share our new preprint, covering the impact and cutting edge improvements to PrimalScheme!
Preprint: www.biorxiv.org/content/10.1...
Preprint: www.biorxiv.org/content/10.1...
Reposted by Reindert Nijland
Bacterial clustering amplifies the reshaping of eutrophic plumes around marine particles: A hybrid data-driven model journals.plos.org/ploscompbiol... #jcampubs
Bacterial clustering amplifies the reshaping of eutrophic plumes around marine particles: A hybrid data-driven model
Author summary Recent lines of evidence highlight the pronounced impact of slow-moving particles on the oceanic carbon cycle and associated ecosystem functions (e.g., CO2 removal, oxygenation, acidifi...
journals.plos.org
December 12, 2024 at 2:30 PM
Bacterial clustering amplifies the reshaping of eutrophic plumes around marine particles: A hybrid data-driven model journals.plos.org/ploscompbiol... #jcampubs
I sequenced and assembled the full mitochondrial DNA of the angular crab (Goneplax rhomboides) using the @nanoporetech.com #MinION #Mk1D, so #nanopore only. The raw read quality really is amazing, and the assembly looks perfect!
www.ncbi.nlm.nih.gov/nuccore/PQ64...
www.ncbi.nlm.nih.gov/nuccore/PQ64...
December 3, 2024 at 12:48 PM
I sequenced and assembled the full mitochondrial DNA of the angular crab (Goneplax rhomboides) using the @nanoporetech.com #MinION #Mk1D, so #nanopore only. The raw read quality really is amazing, and the assembly looks perfect!
www.ncbi.nlm.nih.gov/nuccore/PQ64...
www.ncbi.nlm.nih.gov/nuccore/PQ64...
Reposted by Reindert Nijland
Made starter pack of marine scientists working @w-u-r.bsky.social. Anyone missing? Let me know.
@jimvanbelzen.bsky.social @martinbaptist.bsky.social @annetpauwelussen.bsky.social @reindertn.bsky.social @rolfgroeneveld.bsky.social @hansverdaat.bsky.social @evertdefroe.bsky.social
go.bsky.app/Nz4Qtjx
@jimvanbelzen.bsky.social @martinbaptist.bsky.social @annetpauwelussen.bsky.social @reindertn.bsky.social @rolfgroeneveld.bsky.social @hansverdaat.bsky.social @evertdefroe.bsky.social
go.bsky.app/Nz4Qtjx
December 3, 2024 at 11:42 AM
Made starter pack of marine scientists working @w-u-r.bsky.social. Anyone missing? Let me know.
@jimvanbelzen.bsky.social @martinbaptist.bsky.social @annetpauwelussen.bsky.social @reindertn.bsky.social @rolfgroeneveld.bsky.social @hansverdaat.bsky.social @evertdefroe.bsky.social
go.bsky.app/Nz4Qtjx
@jimvanbelzen.bsky.social @martinbaptist.bsky.social @annetpauwelussen.bsky.social @reindertn.bsky.social @rolfgroeneveld.bsky.social @hansverdaat.bsky.social @evertdefroe.bsky.social
go.bsky.app/Nz4Qtjx
My baby Small-spotted catsharks are still happy, and so much fun to watch!
November 30, 2024 at 6:44 PM
My baby Small-spotted catsharks are still happy, and so much fun to watch!
Today I got some new guests in my home aquarium! #babyshark #doo-doo-doo
November 21, 2024 at 8:18 PM
Today I got some new guests in my home aquarium! #babyshark #doo-doo-doo
Reposted by Reindert Nijland
The Marine & Freshwater Research Institute in Iceland seeks a PhD student (funded 4 yr position) to research bycatch of #marinemammals & #seabirds in Icelandic fisheries (with some cross over with us here at SLU on EU projects on bycatch of sensitive species). 🐟🧪🦑🌎
www.hafogvatn.is/en/about/new...
www.hafogvatn.is/en/about/new...
We are seeking a PhD student in marine biology
The Marine and Freshwater Research Institute (MFRI) in Iceland is seeking a PhD student in Marine Biology for a funded full-time position for 4 years with
www.hafogvatn.is
November 21, 2024 at 11:06 AM
The Marine & Freshwater Research Institute in Iceland seeks a PhD student (funded 4 yr position) to research bycatch of #marinemammals & #seabirds in Icelandic fisheries (with some cross over with us here at SLU on EU projects on bycatch of sensitive species). 🐟🧪🦑🌎
www.hafogvatn.is/en/about/new...
www.hafogvatn.is/en/about/new...
I contributed to this article in Pioneering Tech Magazine by TU Delft on the Ecological Impact of offshore wind in the North Sea, including North Sea underwater pictures: www.tudelft.nl/en/innovatio...
Offshore wind: how to balance growth and nature?
As you depart from Schiphol and look out over the North Sea, you’ll see 'islands' of slender, white wind turbines looming below. It’s a serene, futuristic landscape that stands in stark contrast to th...
www.tudelft.nl
November 19, 2024 at 9:23 PM
I contributed to this article in Pioneering Tech Magazine by TU Delft on the Ecological Impact of offshore wind in the North Sea, including North Sea underwater pictures: www.tudelft.nl/en/innovatio...
Out now: Review and update on the spread of lionfish in the Mediterranean, led by WUR PhD student @BottaciniD neobiota.pensoft.net/article/1104...
Lionfish (Pterois miles) in the Mediterranean Sea: a review of the available knowledge with an update on the invasion front
Invasive species often severely impact ecosystems and human activities in the areas that they invade. The lionfishes Pterois miles and P. volitans are regarded as the most successful invasive fishes i...
neobiota.pensoft.net
April 27, 2024 at 7:50 AM
Out now: Review and update on the spread of lionfish in the Mediterranean, led by WUR PhD student @BottaciniD neobiota.pensoft.net/article/1104...
At Marine Animal Ecology (WUR) we are developing a Biodiversity Sensing box, which combines imaging (both fish and microscopic plankton), acoustics and environmental DNA (eDNA) for marine biodiversity monitoring. More information in the article below
Automatic sampling underwater - Resource online
Measuring biodiversity without divers.
www.resource-online.nl
April 4, 2024 at 7:56 AM
At Marine Animal Ecology (WUR) we are developing a Biodiversity Sensing box, which combines imaging (both fish and microscopic plankton), acoustics and environmental DNA (eDNA) for marine biodiversity monitoring. More information in the article below
We recently published a forum article in Trends in Ecology & Evolution on "Edge computing in wildlife behavior and ecology". One of the presented cases is our biodiversity/fish sensing box:
doi.org/10.1016/j.tr...
doi.org/10.1016/j.tr...
January 22, 2024 at 8:53 AM
We recently published a forum article in Trends in Ecology & Evolution on "Edge computing in wildlife behavior and ecology". One of the presented cases is our biodiversity/fish sensing box:
doi.org/10.1016/j.tr...
doi.org/10.1016/j.tr...
Reposted by Reindert Nijland
Ten days remaining to apply to this exciting PhD position - join us in our quest to explore novel archaeal lineages!
Want to do a #PhD focusing on discovery, cultivation and characterization of novel prokaryotes? Come and join my group in the Laboratory of Microbiology at Wageningen University! Apply here: wur.nl/en/vacancy/p... #cultivation #microscopy #archaea #PhDposition Please share & repost
December 21, 2023 at 9:24 AM
Ten days remaining to apply to this exciting PhD position - join us in our quest to explore novel archaeal lineages!
Great manuscript by Wageningen University PhD-student Annemiek Hermans on the "Effect of electromagnetic fields from subsea power cables on elasmobranch behaviour" now available at @biorxivpreprint.bsky.social
www.biorxiv.org/content/10.1...
www.biorxiv.org/content/10.1...
December 19, 2023 at 4:22 PM
Great manuscript by Wageningen University PhD-student Annemiek Hermans on the "Effect of electromagnetic fields from subsea power cables on elasmobranch behaviour" now available at @biorxivpreprint.bsky.social
www.biorxiv.org/content/10.1...
www.biorxiv.org/content/10.1...
Reposted by Reindert Nijland
We are recruiting a new tenure track assistant professor! Join our wonderful department. The topic is microbial interactions, in its broadest sense, as long as it connects well with the NCCR Microbiomes. Application deadline Jan 30. More info here: career5.successfactors.eu/career?compa...
December 19, 2023 at 3:39 PM
We are recruiting a new tenure track assistant professor! Join our wonderful department. The topic is microbial interactions, in its broadest sense, as long as it connects well with the NCCR Microbiomes. Application deadline Jan 30. More info here: career5.successfactors.eu/career?compa...